Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_J04
(800 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35) 52 4e-07
SB_17048| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 8e-04
SB_15443| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_45543| Best HMM Match : PP2C (HMM E-Value=6.00036e-42) 38 0.007
SB_36243| Best HMM Match : 7tm_2 (HMM E-Value=2.2e-09) 38 0.007
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32) 34 0.15
SB_57481| Best HMM Match : PP2C (HMM E-Value=2.9e-32) 29 3.3
SB_29277| Best HMM Match : DUF983 (HMM E-Value=4) 29 3.3
SB_50183| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 7.7
SB_3605| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35)
Length = 916
Score = 52.4 bits (120), Expect = 4e-07
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Frame = +3
Query: 297 GHGGAEVATYCSQNLPNYIKNTDAYKSGDYTKALEDAFLGFDATIATKEVMDILKVLAGE 476
G EVA Y S++LP+ ++ YK G+ +AL D FL D +I ++E + LK +AG+
Sbjct: 40 GGRSQEVAEYVSKHLPDVLRGDIGYKEGNTKQALIDTFLKVDESIVSEEGLKELKEIAGD 99
Query: 477 INPPGXXXXXXXXXXXXVTNLYQEAHLPLQEVLAKY-ENKL 596
+ G L ++A++PL E+LAK EN L
Sbjct: 100 NDDSGDENEADL--------LTKDANIPLSELLAKLKENNL 132
>SB_17048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 41.5 bits (93), Expect = 8e-04
Identities = 23/71 (32%), Positives = 33/71 (46%)
Frame = +3
Query: 198 GASSMQGWRVNQEDAHNTILDFDVNTSLFAVYDGHGGAEVATYCSQNLPNYIKNTDAYKS 377
G +S+QG + ED +L+ D + FAV+DGHGG A + L ++
Sbjct: 92 GFNSLQGKKFVNEDRFK-LLELDPDFYYFAVFDGHGGVSSAEFAHDKLHEIVRRMHRDGE 150
Query: 378 GDYTKALEDAF 410
D K L AF
Sbjct: 151 NDLEKILVQAF 161
>SB_15443| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Frame = +3
Query: 189 LECGASSMQGWRVNQEDAHNTILDF-----DVNTSLFAVYDGHGGAEVATYCSQNLPNYI 353
L + + QG R ED + + D D+ + AV+DGHGG E A + L I
Sbjct: 20 LRVSSEAHQGGRKCMEDFTSILFDRQHIGKDIGQAFIAVFDGHGGREAAVFARSRLWETI 79
Query: 354 KNTDAYKSGD---YTKALEDAFL 413
K + S D KA+++ F+
Sbjct: 80 KKQRGFYSSDPEHVVKAIKEGFM 102
>SB_45543| Best HMM Match : PP2C (HMM E-Value=6.00036e-42)
Length = 375
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +3
Query: 270 NTSLFAVYDGHGGAEVATYCSQNLPNYIKNTDAYKSGDYTKALEDAFLGFDATIATKEVM 449
N + FAV+DGHGG + AT+ + +L ++ + + D AL + F D + + +
Sbjct: 75 NYAYFAVFDGHGGIDAATFAATHLHCFLAQNE-HLIKDPGLALHETFQNTDCSFGARAIS 133
Query: 450 DILKVL 467
++ +L
Sbjct: 134 EVNYIL 139
>SB_36243| Best HMM Match : 7tm_2 (HMM E-Value=2.2e-09)
Length = 1338
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 216 GWRVNQEDAHNTILDFDV-NTSLFAVYDGHGGAEVATYCSQNLP 344
G R + + + F+V NT L+ V+DGH GA VA + +Q LP
Sbjct: 89 GGRREEHEFEDRSFHFNVDNTCLYGVFDGHDGASVADFAAQRLP 132
>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
Length = 905
Score = 33.9 bits (74), Expect = 0.15
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = +3
Query: 219 WRVNQEDAHNTILDF---DVNTSLFAVYDGHGGAEVATYCSQNLPNYI--KNTDAYKSG 380
W+ ED H T D+ D + FAV+DG+ GA A ++ P + K Y+ G
Sbjct: 550 WKTTMEDRH-TFCDYFCNDPQSGFFAVFDGYNGATAAGTSAKTFPEVLARKVESVYRPG 607
>SB_57481| Best HMM Match : PP2C (HMM E-Value=2.9e-32)
Length = 435
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 279 LFAVYDGHGGAEVATYCSQNLPNYI 353
LF V DGHGG A + LP+YI
Sbjct: 62 LFGVMDGHGGNACAHNVCKRLPDYI 86
>SB_29277| Best HMM Match : DUF983 (HMM E-Value=4)
Length = 317
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 326 ICGNFSTSMTVIHRKKGCIDIKVQN 252
ICGN S + T+++ + C +KV N
Sbjct: 258 ICGNLSVASTLVNTSRACFVVKVAN 282
>SB_50183| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 717
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 296 RSWRC*SCHILFTKSTKLHKKH 361
+++RC CH FTKST L K H
Sbjct: 487 KAYRCDECHSTFTKSTSL-KSH 507
>SB_3605| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 629
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 326 ICGNFSTSMTVIHRKKGCIDIKVQN 252
ICGN S + T+++ + C +KV N
Sbjct: 428 ICGNLSVASTLVNTSRVCFVVKVAN 452
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,211,505
Number of Sequences: 59808
Number of extensions: 552209
Number of successful extensions: 1134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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