Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_J04
(800 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00051-13|AAA91358.1| 491|Caenorhabditis elegans Hypothetical p... 120 2e-27
Z46343-1|CAA86456.2| 356|Caenorhabditis elegans Hypothetical pr... 90 2e-18
U00051-14|AAM29692.1| 469|Caenorhabditis elegans Hypothetical p... 81 7e-16
Z73973-3|CAA98265.1| 468|Caenorhabditis elegans Hypothetical pr... 64 1e-10
Z73973-4|CAE54908.1| 367|Caenorhabditis elegans Hypothetical pr... 48 6e-06
Z81525-9|CAB04260.1| 242|Caenorhabditis elegans Hypothetical pr... 38 0.006
AL031264-1|CAA20326.1| 242|Caenorhabditis elegans Hypothetical ... 38 0.006
AC006834-5|AAF40007.1| 451|Caenorhabditis elegans Hypothetical ... 32 0.55
U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein. 31 0.96
U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of... 31 0.96
AC026301-13|AAP13737.1| 766|Caenorhabditis elegans Hypothetical... 30 1.7
CU457741-2|CAM36343.1| 574|Caenorhabditis elegans Hypothetical ... 30 2.2
>U00051-13|AAA91358.1| 491|Caenorhabditis elegans Hypothetical
protein F42G9.1a protein.
Length = 491
Score = 120 bits (288), Expect = 2e-27
Identities = 57/153 (37%), Positives = 87/153 (56%)
Frame = +3
Query: 126 MGAYLSEPVTEKVSSDEANDKLECGASSMQGWRVNQEDAHNTILDFDVNTSLFAVYDGHG 305
MGAYL++P+ EK + + + L ++MQGWRVNQEDAHN ++D + +F VYDGHG
Sbjct: 1 MGAYLNKPIIEKEKEEGSGNGLSYACTTMQGWRVNQEDAHNCVVDLHTDWHMFGVYDGHG 60
Query: 306 GAEVATYCSQNLPNYIKNTDAYKSGDYTKALEDAFLGFDATIATKEVMDILKVLAGEINP 485
G EV+ + S LP+++K +++ D + L+ AF+ FD I +E M LK + E P
Sbjct: 61 GTEVSKFTSAKLPDFLKERKFWEADDVAECLQKAFVDFDDFIRAEESMKELKDIGDEGKP 120
Query: 486 PGXXXXXXXXXXXXVTNLYQEAHLPLQEVLAKY 584
+ +EA +PL E+L +Y
Sbjct: 121 KKAGGEADSEDEADRIDTIEEASVPLAELLKRY 153
>Z46343-1|CAA86456.2| 356|Caenorhabditis elegans Hypothetical
protein T23F11.1 protein.
Length = 356
Score = 89.8 bits (213), Expect = 2e-18
Identities = 46/108 (42%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Frame = +3
Query: 126 MGAYLSEPVTEKVSSDEANDKLECGASSMQGWRVNQEDAHNTILDF--DVNTSLFAVYDG 299
MG LSEPVT+K S+ AN+ G+S MQGWRV+ EDAH +L D + FAVYDG
Sbjct: 1 MGQTLSEPVTKKESASCANENYLVGSSCMQGWRVDMEDAHTHLLSLPDDPKCAFFAVYDG 60
Query: 300 HGGAEVATYCSQNLPNYIKNTDAYKSGDYTKALEDAFLGFDATIATKE 443
HGG++V+ Y NL + + G+ +A+E FL D + E
Sbjct: 61 HGGSKVSQYSGINLHKKVVAQKEFSEGNMKEAIEKGFLELDQQMRVDE 108
>U00051-14|AAM29692.1| 469|Caenorhabditis elegans Hypothetical
protein F42G9.1b protein.
Length = 469
Score = 81.4 bits (192), Expect = 7e-16
Identities = 40/119 (33%), Positives = 63/119 (52%)
Frame = +3
Query: 228 NQEDAHNTILDFDVNTSLFAVYDGHGGAEVATYCSQNLPNYIKNTDAYKSGDYTKALEDA 407
N +DAHN ++D + +F VYDGHGG EV+ + S LP+++K +++ D + L+ A
Sbjct: 13 NFQDAHNCVVDLHTDWHMFGVYDGHGGTEVSKFTSAKLPDFLKERKFWEADDVAECLQKA 72
Query: 408 FLGFDATIATKEVMDILKVLAGEINPPGXXXXXXXXXXXXVTNLYQEAHLPLQEVLAKY 584
F+ FD I +E M LK + E P + +EA +PL E+L +Y
Sbjct: 73 FVDFDDFIRAEESMKELKDIGDEGKPKKAGGEADSEDEADRIDTIEEASVPLAELLKRY 131
>Z73973-3|CAA98265.1| 468|Caenorhabditis elegans Hypothetical
protein F25D1.1a protein.
Length = 468
Score = 64.1 bits (149), Expect = 1e-10
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Frame = +3
Query: 123 TMGAYLSEPVTEKVSSDEANDKLECGASSMQGWRVNQEDAH--NTILDFD---VNTSLFA 287
TMGA+L +P T+K + + + G SSMQGWR+ ED+H I+ + S FA
Sbjct: 83 TMGAFLDKPKTDKTNVHGEGNGIRYGMSSMQGWRICMEDSHIAEAIMSQSSPYKDWSFFA 142
Query: 288 VYDGHGGAEVATYCSQNLPNYIKNTDAYKSGDYTKALED 404
V+DGH G +A S L ++ +++ ++ + TK LE+
Sbjct: 143 VFDGHAGHHIANRASSQLLEHLISSEEFR--EMTKTLEE 179
>Z73973-4|CAE54908.1| 367|Caenorhabditis elegans Hypothetical
protein F25D1.1b protein.
Length = 367
Score = 48.4 bits (110), Expect = 6e-06
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Frame = +3
Query: 198 GASSMQGWRVNQEDAH--NTILDFD---VNTSLFAVYDGHGGAEVATYCSQNLPNYIKNT 362
G SSMQGWR+ ED+H I+ + S FAV+DGH G +A S L ++ ++
Sbjct: 7 GMSSMQGWRICMEDSHIAEAIMSQSSPYKDWSFFAVFDGHAGHHIANRASSQLLEHLISS 66
Query: 363 DAYKSGDYTKALED 404
+ ++ + TK LE+
Sbjct: 67 EEFR--EMTKTLEE 78
>Z81525-9|CAB04260.1| 242|Caenorhabditis elegans Hypothetical
protein F33A8.6 protein.
Length = 242
Score = 38.3 bits (85), Expect = 0.006
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 11/77 (14%)
Frame = +3
Query: 213 QGWRVNQEDAHNTILDFDVNT--------SLFAVYDGHGGAEVATYCSQNLPNYIKNTDA 368
+G R + +D H + FD+ T S FA++DGH G A +C + +K A
Sbjct: 40 KGERADMQDTHIMLPKFDLGTEKSFLSRASFFAIFDGHAGPRAAEHCQSQMGKTVKEKLA 99
Query: 369 YKSGDY---TKALEDAF 410
K D+ TK+L+ F
Sbjct: 100 -KFSDFPTLTKSLKQTF 115
>AL031264-1|CAA20326.1| 242|Caenorhabditis elegans Hypothetical
protein F33A8.6 protein.
Length = 242
Score = 38.3 bits (85), Expect = 0.006
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 11/77 (14%)
Frame = +3
Query: 213 QGWRVNQEDAHNTILDFDVNT--------SLFAVYDGHGGAEVATYCSQNLPNYIKNTDA 368
+G R + +D H + FD+ T S FA++DGH G A +C + +K A
Sbjct: 40 KGERADMQDTHIMLPKFDLGTEKSFLSRASFFAIFDGHAGPRAAEHCQSQMGKTVKEKLA 99
Query: 369 YKSGDY---TKALEDAF 410
K D+ TK+L+ F
Sbjct: 100 -KFSDFPTLTKSLKQTF 115
>AC006834-5|AAF40007.1| 451|Caenorhabditis elegans Hypothetical
protein ZK973.3 protein.
Length = 451
Score = 31.9 bits (69), Expect = 0.55
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 234 EDAHNTILDFDVNTSLFAVYDGHGGAEVATYCSQNLPNYI 353
ED ++ LF V+DGHGG + + + S NL Y+
Sbjct: 54 EDFYSAAKCLSSRAFLFGVFDGHGGQQCSRHISTNLYPYL 93
>U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein.
Length = 449
Score = 31.1 bits (67), Expect = 0.96
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +3
Query: 276 SLFAVYDGHGGAEVATYCSQNLPNYIKNTDAYKSGDYTKALED 404
S+ AV+DGHGG E + Y + +L + + KS D + +LED
Sbjct: 196 SVLAVFDGHGGHECSQYAAGHL--WETWLEVRKSRDPSDSLED 236
>U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 2 protein.
Length = 449
Score = 31.1 bits (67), Expect = 0.96
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +3
Query: 276 SLFAVYDGHGGAEVATYCSQNLPNYIKNTDAYKSGDYTKALED 404
S+ AV+DGHGG E + Y + +L + + KS D + +LED
Sbjct: 196 SVLAVFDGHGGHECSQYAAGHL--WETWLEVRKSRDPSDSLED 236
>AC026301-13|AAP13737.1| 766|Caenorhabditis elegans Hypothetical
protein Y54F10BM.1 protein.
Length = 766
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +3
Query: 225 VNQEDAHNTILDFDVNTSLFAVYDGHGGAEVATYCSQNLPNYIKNTDAYKSGDYTKALED 404
++ E +N +LD+ + V+DGHGG + Y ++L I ++S LE
Sbjct: 39 IHTERINNGLLDW----TFVGVFDGHGGEHASEYVRRHLLMNITKNQKFESNSDEDILEA 94
Query: 405 AFLGF 419
GF
Sbjct: 95 IRQGF 99
>CU457741-2|CAM36343.1| 574|Caenorhabditis elegans Hypothetical
protein C42C1.2 protein.
Length = 574
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 276 SLFAVYDGHGGAEVATYCSQNLPNYIKN 359
+LF+++DGH G+ VA S+ L ++K+
Sbjct: 173 ALFSLFDGHAGSAVAVVASKCLHEHVKS 200
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,788,941
Number of Sequences: 27780
Number of extensions: 412717
Number of successful extensions: 966
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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