Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_J03
(761 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702... 207 6e-54
04_04_0143 - 23091613-23092467 194 6e-50
02_04_0362 - 22366668-22367516 194 6e-50
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925... 176 1e-44
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133... 166 2e-41
03_06_0427 - 33857008-33857137,33857224-33857258,33857966-338580... 94 1e-19
05_02_0099 - 6582498-6582725,6583148-6583235,6583437-6583830,658... 32 0.43
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 30 1.7
11_02_0089 + 8203056-8203535 29 4.0
01_06_1335 - 36393086-36393100,36393439-36393571,36394693-36394823 29 5.3
>03_06_0626 -
35169352-35169546,35169736-35169948,35170102-35170272,
35170826-35170942,35171078-35171233
Length = 283
Score = 207 bits (506), Expect = 6e-54
Identities = 96/155 (61%), Positives = 125/155 (80%)
Frame = +1
Query: 220 SVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDL 399
S++ VEGGHRAI+FNR+ G++ V+ EG HF IPWF+ PIIYD+R+RP + S +GS+DL
Sbjct: 30 SLYNVEGGHRAIVFNRLEGIKDKVYPEGTHFMIPWFERPIIYDVRARPNLVESTSGSRDL 89
Query: 400 QMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQ 579
QMV I LRVL+RP L T+YR LG +++E+VLPSI +E LK+VVA++NASQLITQR+
Sbjct: 90 QMVRIGLRVLTRPLPEKLPTIYRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQREA 149
Query: 580 VSLLIRRELVERAADFNIILDDVSLTELSFGKEYT 684
VS IR+ L ERA++FNI LDDVS+T LSFGKE+T
Sbjct: 150 VSREIRKILTERASNFNIALDDVSITSLSFGKEFT 184
>04_04_0143 - 23091613-23092467
Length = 284
Score = 194 bits (473), Expect = 6e-50
Identities = 89/157 (56%), Positives = 120/157 (76%)
Frame = +1
Query: 214 SQSVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSK 393
S S++TV+GG RA++F+R GV EG HF +PW Q P ++DIR+RP SS +G+K
Sbjct: 29 SASLYTVDGGERAVIFDRFRGVLPETVGEGTHFLVPWLQKPFVFDIRTRPHNFSSNSGTK 88
Query: 394 DLQMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQR 573
DLQMVN++LR+LSRPD L T++ LG +YD+KVLPSI NEVLK+VVA+FNA QL+T+R
Sbjct: 89 DLQMVNLTLRLLSRPDVVHLPTIFTSLGLEYDDKVLPSIGNEVLKAVVAQFNADQLLTER 148
Query: 574 QQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYT 684
VS L+R L+ RA +FNIILDDV++T LS+G E++
Sbjct: 149 PHVSALVRDALIRRAREFNIILDDVAITHLSYGIEFS 185
>02_04_0362 - 22366668-22367516
Length = 282
Score = 194 bits (473), Expect = 6e-50
Identities = 87/157 (55%), Positives = 122/157 (77%)
Frame = +1
Query: 214 SQSVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSK 393
S +++TV+GG RA++F+R GV +EG HF +PW Q P I+DIR+RP SS +G+K
Sbjct: 30 STALYTVDGGQRAVIFDRFRGVLPETSSEGTHFIVPWLQKPFIFDIRTRPHSFSSTSGTK 89
Query: 394 DLQMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQR 573
DLQMV+++LRVL+RPD + L ++ LG +YDEKVLPSI NEVLK+VVA+FNA QL+T+R
Sbjct: 90 DLQMVSLTLRVLARPDIDRLPDIFTSLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTER 149
Query: 574 QQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYT 684
VS L+R L+ RAA+FNI+LDDV++T L++G E++
Sbjct: 150 PHVSALVRDSLIRRAAEFNIVLDDVAITHLAYGPEFS 186
>07_01_1055 -
9253936-9254130,9254271-9254483,9254588-9254758,
9255743-9255859,9257021-9257186,9258885-9258934,
9259095-9259268
Length = 361
Score = 176 bits (429), Expect = 1e-44
Identities = 84/137 (61%), Positives = 106/137 (77%)
Frame = +1
Query: 274 GVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLSRPDANML 453
G V+ EG HF IPWF+ PIIYD+R+RP + S +GS+DLQMV I LRVL+RP L
Sbjct: 126 GTIYQVYPEGTHFMIPWFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVLTRPMPEKL 185
Query: 454 ATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLIRRELVERAADFNI 633
T+YR LG +++E+VLPSI +E LK+VVA++NASQLITQR+ VS IR+ L ERA +FNI
Sbjct: 186 PTIYRTLGENFNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERARNFNI 245
Query: 634 ILDDVSLTELSFGKEYT 684
LDDVS+T LSFGKE+T
Sbjct: 246 ALDDVSITSLSFGKEFT 262
Score = 36.3 bits (80), Expect = 0.027
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = +1
Query: 220 SVFTVEGGHRAIMFNRIGGVQ 282
S++ VEGGHRAI+FNRI G++
Sbjct: 36 SLYNVEGGHRAIVFNRIQGIK 56
>03_06_0437 -
33912326-33912520,33912870-33912998,33913147-33913317,
33913877-33913993,33914150-33914800
Length = 420
Score = 166 bits (403), Expect = 2e-41
Identities = 81/134 (60%), Positives = 104/134 (77%)
Frame = +1
Query: 283 QHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLSRPDANMLATM 462
Q V+ EG F I F+ PIIYD+R+RP + S +GS+DLQMV I LRVL+RP L T+
Sbjct: 216 QEVYPEGTQFMILLFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVLTRPLPEKLPTI 275
Query: 463 YRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLIRRELVERAADFNIILD 642
YR LG +++E+VLPSI +E LK+VVA++NASQLITQR+ VS IR+ L ERA++FNI LD
Sbjct: 276 YRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERASNFNIALD 335
Query: 643 DVSLTELSFGKEYT 684
DVS+T LSFGKE+T
Sbjct: 336 DVSITSLSFGKEFT 349
>03_06_0427 -
33857008-33857137,33857224-33857258,33857966-33858046,
33858213-33858338,33858410-33858568,33858797-33858934,
33859084-33859155,33859359-33860273
Length = 551
Score = 93.9 bits (223), Expect = 1e-19
Identities = 51/110 (46%), Positives = 70/110 (63%)
Frame = +1
Query: 247 RAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRV 426
R I N+ + Q + E HF IPWF+ I+D+ RP + S +GS+DLQMV L V
Sbjct: 323 REICNNKAVRLLQLLNPEKSHFSIPWFERLTIFDVCPRPNLVESTSGSRDLQMVRPGLGV 382
Query: 427 LSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQ 576
L+RP L T YR LG ++ E+VL S+ +E LK+VVA++NASQLI R+
Sbjct: 383 LTRP----LPTKYRSLGDNFCERVLTSLMHETLKAVVAQYNASQLIIPRE 428
>05_02_0099 -
6582498-6582725,6583148-6583235,6583437-6583830,
6585855-6585990,6586413-6586931
Length = 454
Score = 32.3 bits (70), Expect = 0.43
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +1
Query: 235 EGGHRAIMFNRI--GGVQQHVFTEGMHFRIPWFQYPIIYDIRSRP 363
EGGHR +++ + GG+Q+H++ G +I F IY ++ RP
Sbjct: 194 EGGHRLLVYEFMANGGLQEHLYPNGAFEKIETFS---IYLVKQRP 235
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Frame = +1
Query: 457 TMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQ---------VSLLIRRELV 609
T+ +G D+K + N+ K VV + +L+ + VS R+E+V
Sbjct: 51 TLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIV 110
Query: 610 ERAADFNIILDDVSLTELSFGKE 678
ERAA +I++ + +LS+ E
Sbjct: 111 ERAAQLDIVISTLKFIQLSYDYE 133
>11_02_0089 + 8203056-8203535
Length = 159
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = -3
Query: 246 MTSFHGKHRLGDAISRSADNGYHFETDAKTRWPTFSELPCHV 121
M S HG+ R G A S S D G + A T PT PC+V
Sbjct: 1 MASCHGQRRSGRATSSSTDTGIRWH-QAVTGVPTII-APCYV 40
>01_06_1335 - 36393086-36393100,36393439-36393571,36394693-36394823
Length = 92
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +2
Query: 122 TWQGSSLKVGHLVLASVSKW*PLSALRLMASPNRC 226
TW G SL+VG LV A+ S SAL A C
Sbjct: 10 TWSGLSLRVGQLVFAAASVCATASALGFAAYTAFC 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,600,163
Number of Sequences: 37544
Number of extensions: 386076
Number of successful extensions: 871
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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