Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J03
         (761 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28940-7|AAA68353.2|  294|Caenorhabditis elegans Mitochondrial p...   250   6e-67
AC087079-9|AAK27865.1|  275|Caenorhabditis elegans Mitochondrial...   182   3e-46
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    31   1.2  
AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ...    28   6.3  
AC024756-7|ABP57814.1|  178|Caenorhabditis elegans Hypothetical ...    28   6.3  

>U28940-7|AAA68353.2|  294|Caenorhabditis elegans Mitochondrial
           prohibitin complexprotein 2 protein.
          Length = 294

 Score =  250 bits (613), Expect = 6e-67
 Identities = 116/157 (73%), Positives = 137/157 (87%)
 Frame = +1

Query: 214 SQSVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSK 393
           +QS+FTVE GHRAIMFNRIGG+   ++ EG+HFRIPWFQYPIIYDIR+RP +I SPTGSK
Sbjct: 37  AQSMFTVEAGHRAIMFNRIGGLSTDLYKEGLHFRIPWFQYPIIYDIRARPNQIRSPTGSK 96

Query: 394 DLQMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQR 573
           DLQMVNI LRVLSRP+   L  +YR LG +++E+VLPSICNEVLK VVAKFNASQLITQR
Sbjct: 97  DLQMVNIGLRVLSRPNPEHLVHIYRTLGQNWEERVLPSICNEVLKGVVAKFNASQLITQR 156

Query: 574 QQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYT 684
           QQVS+L+R+ L+ERA DFNIILDDVSLTEL+F  +Y+
Sbjct: 157 QQVSMLVRKTLIERALDFNIILDDVSLTELAFSPQYS 193


>AC087079-9|AAK27865.1|  275|Caenorhabditis elegans Mitochondrial
           prohibitin complexprotein 1 protein.
          Length = 275

 Score =  182 bits (442), Expect = 3e-46
 Identities = 84/155 (54%), Positives = 116/155 (74%)
 Frame = +1

Query: 220 SVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDL 399
           +++ V+GG RA++F+R  GV+  V  EG HF IPW Q PII+DIRS PR +++ TGSKDL
Sbjct: 29  ALYNVDGGQRAVIFDRFSGVKNEVVGEGTHFLIPWVQKPIIFDIRSTPRAVTTITGSKDL 88

Query: 400 QMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQ 579
           Q VNI+LR+L RP  + L  +Y  +G DY E+VLPSI NEVLK+VVA+F+A ++ITQR+ 
Sbjct: 89  QNVNITLRILHRPSPDRLPNIYLNIGLDYAERVLPSITNEVLKAVVAQFDAHEMITQREV 148

Query: 580 VSLLIRRELVERAADFNIILDDVSLTELSFGKEYT 684
           VS      L ERAA F ++LDD+++T L+FG+E+T
Sbjct: 149 VSQRASVALRERAAQFGLLLDDIAITHLNFGREFT 183


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 299 KVCTSVYRGFNTPSFMISDPDLARYLPRLVQKI 397
           K  T +  GFN PS MISD +L   + R+++ +
Sbjct: 291 KTSTDIIDGFNVPSNMISDDNLPALIYRVIETL 323


>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
           protein Y73F8A.5 protein.
          Length = 1019

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 369 DIFPDWFKRFTDGKHFPPSAFSTRCQYASNNVQTTWN 479
           D  P++  ++ + +  PP   STRC+Y S +V T  N
Sbjct: 405 DTVPNYGLQYQNWEVLPPK-LSTRCEYISEDVATACN 440


>AC024756-7|ABP57814.1|  178|Caenorhabditis elegans Hypothetical
           protein Y34D9A.8b protein.
          Length = 178

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 366 ARSGSDIINDGVLKPRYTEVHTFGEYVLLYSSYSVEHNGTMT 241
           AR G+ +  +GV +PR T V      V   ++ + E +GT+T
Sbjct: 73  ARGGAPMAREGVAQPRQTNVQATVAAVKETTTITAESSGTVT 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,973,595
Number of Sequences: 27780
Number of extensions: 339728
Number of successful extensions: 789
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)