Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J02
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47826| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_42292| Best HMM Match : EGF (HMM E-Value=3)                         30   2.0  
SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23)           29   2.7  
SB_33165| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   3.6  
SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)                     28   6.2  

>SB_47826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 20/31 (64%), Positives = 26/31 (83%)
 Frame = +1

Query: 478 DIDLKVAAKFFGTKFACGSSVTGDDEIVIQG 570
           +IDLK A+K F  +F+CG+SVTGDD+I IQG
Sbjct: 33  EIDLKKASKAFANRFSCGASVTGDDKIEIQG 63



 Score = 34.3 bits (75), Expect = 0.094
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +2

Query: 566 RGDVKDDLFDIIPEKWP 616
           +GDV DDL+D IP+KWP
Sbjct: 62  QGDVTDDLWDFIPDKWP 78


>SB_42292| Best HMM Match : EGF (HMM E-Value=3)
          Length = 250

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
 Frame = -2

Query: 686 SSXSVGDTTFFDHQDLQYCL----HQFXATFQV*YQKDHL*HHP*ITISSSPVTEDPQAN 519
           +S SV D+T  +  DL+  +         T        ++ HHP    SSS +   P  N
Sbjct: 88  ASVSVADSTTPESSDLETTMIPSSEAVTKTSSFEMTATNVEHHPVSDASSSAIAPSPTLN 147

Query: 518 FVPKNFAATFRSISKVLNPDTTVTDFFLPRGARDTCTN 405
            V  + AAT   I     P + + D    RG +  C N
Sbjct: 148 QVQTSSAATSGQIVCTAKPGSPMGD----RGCQSFCDN 181


>SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23)
          Length = 1531

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = -2

Query: 563  ITISSSPVTEDPQANFVPKNFAATFRSISKVLNPDTTVTDFFLPRGARDTCTNL 402
            + ++S+  T DP  + +    A+   S    +NP T V  +++  G+R +C ++
Sbjct: 1015 VFLTSASNTSDPSGSLIYNTDASHSASYLPGVNPSTGVVWYWMREGSRKSCNDI 1068


>SB_33165| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1310

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 564 SGVMLKMIFLISYLKSGXKLMKTVLKILVIKKGS 665
           S V+L +IF+      G KL+  +L + V+KKG+
Sbjct: 732 SAVVLLLIFIFCVFTEGEKLVICILLLQVVKKGN 765


>SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)
          Length = 1998

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +2

Query: 515  QNLLVDLQSQEMMR**FRGDVKDDLFDIIPEKWPXIDEDSIEDLGDQKR 661
            ++L   L+ Q+ +   ++ D++D L DI+  K   +D+D  E++ +Q R
Sbjct: 1201 KDLESQLEEQKKLNANYQKDIEDLLNDIVKLKMRGMDDDGTEEMENQIR 1249


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,737,533
Number of Sequences: 59808
Number of extensions: 287303
Number of successful extensions: 826
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)