Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J02
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11900.1 68418.m01392 eukaryotic translation initiation facto...    73   2e-13
At1g71350.1 68414.m08235 eukaryotic translation initiation facto...    33   0.24 
At5g18750.1 68418.m02226 DNAJ heat shock N-terminal domain-conta...    30   1.7  
At5g18730.1 68418.m02222 hypothetical protein predicted proteins...    29   3.8  
At5g10560.1 68418.m01222 glycosyl hydrolase family 3 protein bet...    27   8.9  

>At5g11900.1 68418.m01392 eukaryotic translation initiation factor
           SUI1 family protein similar to SP|O43583
           Density-regulated protein (DRP1 protein) (Smooth muscle
           cell associated protein-3) {Homo sapiens}; contains Pfam
           profile PF01253: Translation initiation factor SUI1
          Length = 198

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 52/158 (32%), Positives = 73/158 (46%), Gaps = 27/158 (17%)
 Frame = +1

Query: 178 PIKVQYCGNCSMPIEYCEYYPEYDKCKQWLEKNLPTEF--------EKVK---LDXXXXX 324
           P+KV YCG CS+P EYCE+ P++ +CK WL +N P  +        EK      D     
Sbjct: 7   PVKVLYCGVCSLPAEYCEFGPDFARCKPWLVENAPDLYPDLLKEANEKAADNVSDKLQSV 66

Query: 325 XXXXXXXXXXXXXXXMLKSKKKEDVPKL------------VQVSRAPRGKKKSVTVVSGL 468
                             + KKE+V +L            V + +  R K+K +T+V GL
Sbjct: 67  GISSGGADGAPSSAQTGGTSKKEEVKRLPGGKVKKKDRQEVIIEKVVRNKRKCITIVKGL 126

Query: 469 STFDIDLKVAAKFFGTKFACGSSV----TGDDEIVIQG 570
             F I L  A+K  G KFA G+SV    T  ++I +QG
Sbjct: 127 ELFGIKLSDASKKLGKKFATGASVVKGPTEKEQIDVQG 164



 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 566 RGDVKDDLFDIIPEKWPXIDEDSIEDLGDQKR 661
           +GD+  D+ + I + WP + E SI  + D K+
Sbjct: 163 QGDIIYDIVEFITDTWPDVPERSIFFIEDGKK 194


>At1g71350.1 68414.m08235 eukaryotic translation initiation factor
           SUI1 family protein weak similarity to SP|P41214 Ligatin
           (Hepatocellular carcinoma-associated antigen 56) {Homo
           sapiens}; contains Pfam profile PF01253: Translation
           initiation factor SUI1
          Length = 597

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = +1

Query: 403 KLVQVSRAPRGKKKSVTVVSGLSTFDIDLKVAAKFFGTKFACGSSV 540
           K VQ+    R   K VT V+G+ TF ID          KFAC +SV
Sbjct: 508 KPVQIMTERRQGNKKVTKVTGMETFLIDPDSFGSELQKKFACSTSV 553


>At5g18750.1 68418.m02226 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 884

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 211 MPIEYCEYYPEYDKCKQWLEKNLPTEFEKVKL 306
           + I++ E  P+ +K   W+ KNLP    K KL
Sbjct: 448 LKIQWLEAEPDDEKANLWVRKNLPISIGKFKL 479


>At5g18730.1 68418.m02222 hypothetical protein predicted proteins -
           Arabidopsis thaliana
          Length = 644

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 208 SMPIEYCEYYPEYDKCKQWLEKNLPTEFEKVKL 306
           S+ I Y E  P+ +K  QW E++LP    K +L
Sbjct: 204 SLRITYLEPDPDGEKETQWFEEDLPVSVGKFRL 236


>At5g10560.1 68418.m01222 glycosyl hydrolase family 3 protein
           beta-xylosidase, Aspergllus nidulans, EMBL:ANXLND
          Length = 792

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 360 WQGYVKIQEERRCSQVSAGISCSSGQEEISHSRVWIE 470
           +QGY K  EE     + AG+  + G   + H++  IE
Sbjct: 319 YQGYTKSPEEAVADAIKAGVDINCGTYMLRHTQSAIE 355


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,908,459
Number of Sequences: 28952
Number of extensions: 208595
Number of successful extensions: 631
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)