Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_I24
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)              183   7e-47
SB_19199| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.002
SB_3513| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.002
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        31   0.63 
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.63 
SB_33518| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_39360| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_22093| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.4  
SB_13324| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         27   7.7  

>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
          Length = 427

 Score =  183 bits (446), Expect = 7e-47
 Identities = 84/119 (70%), Positives = 99/119 (83%)
 Frame = +2

Query: 44  MADVEVEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLA 223
           M+D E +  T    +G  MD+N ALQEVLKTALIH GL  GLHEAAK+LDKR+A LC+L+
Sbjct: 1   MSDAEGDDTTQQPAAGGAMDINTALQEVLKTALIHDGLSRGLHEAAKSLDKREAHLCILS 60

Query: 224 ENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 400
            NCDEA Y KLV+ALC EH IPL+KVD++KKLGEWAGLCKIDK+GKARK+VGCSCVV+K
Sbjct: 61  NNCDEAMYVKLVEALCAEHGIPLLKVDDSKKLGEWAGLCKIDKEGKARKVVGCSCVVVK 119


>SB_19199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 68

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
 Frame = +2

Query: 191 DKRQAVLCVLAEN--CDEA--AYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 334
           D     LCVL EN   D     + +L++A C E+ IP+VKVD+++KL   AG
Sbjct: 2   DPDDVTLCVLVENRHADPGIQVHCRLIEAFCWEYPIPVVKVDSSRKLKTIAG 53


>SB_3513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
 Frame = +2

Query: 191 DKRQAVLCVLAEN--CDEA--AYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 334
           D     LCVL EN   D     + +L++A C E+ IP+VKVD+++KL   AG
Sbjct: 2   DPDDVTLCVLVENRHADPGIQVHCRLIEAFCWEYPIPVVKVDSSRKLKTIAG 53


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +2

Query: 161 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGE 325
           +G++     ++ ++A L V+A + D       + ALC + Q+P   V    +LG+
Sbjct: 47  YGINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGK 101


>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +2

Query: 161 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGE 325
           +G++     ++ ++A L V+A + D       + ALC + Q+P   V    +LG+
Sbjct: 138 YGINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGK 192


>SB_33518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -1

Query: 313 FVVVNLDQWNLMFVAQSLNKFLVCGFITVLSQNT*YCLPLVKSFSGFV 170
           F  VNL +W++ F A +L+++ +C F TV       C   V  F  F+
Sbjct: 256 FQAVNLSRWSMCFQAVNLSRWFMC-FQTVNLSRWFMCFQAVNLFRWFM 302



 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 331 SPFSKLFVVVNLDQWNLMFVAQSLNKFLVC 242
           S +S  F  VNL +W + F A +L+++ +C
Sbjct: 178 SRWSMCFQTVNLSRWFMCFQAVNLSRWFMC 207


>SB_39360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 397 DDNTGAADNFPCLAILVNLAETSPFSKLF 311
           DD    +D +PC+ I+VN++ T   +K F
Sbjct: 10  DDGLTCSDVYPCVEIMVNISSTGSETKKF 38


>SB_22093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 742

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
 Frame = +2

Query: 167 LHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKK----LGEWAG 334
           LH+    LD   A + +L  N  +       Q L      P+   DN +     + ++ G
Sbjct: 363 LHQRGVNLDTTTANMTILTSNIIQQLNNVSFQGLTG----PVSFTDNQRNGIIAIKQFQG 418

Query: 335 LCKIDKDGKARKIVGC 382
           +  +DK  K R ++GC
Sbjct: 419 MAPLDKPAKIRLVIGC 434


>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1957

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 149 GGLVHGLHEAAK--ALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQI 286
           G L   LHE +K  +L  R A+ C ++E  +    +++V    N H I
Sbjct: 167 GSLHFVLHETSKEISLPDRVAIFCDVSEGLEFLKSRRIVHCFLNSHSI 214


>SB_13324| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 446

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = +3

Query: 9   FRYARQS--NSQQPWLMLKSRSPPTPSCRVTTWT 104
           FRY + S   ++  W    S   P P CR T W+
Sbjct: 122 FRYPQNSPNGTRATWKQFPSHDLPPPDCRETDWS 155


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 421 SVGCAQGLPQVVELILRCNANPY 489
           S+ CA G   VVEL+L   ANPY
Sbjct: 83  SLACAGGHLAVVELLLAHGANPY 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,547,115
Number of Sequences: 59808
Number of extensions: 348319
Number of successful extensions: 972
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)