Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_I23
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    52   1e-07
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    38   0.001
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    25   9.5  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    25   9.5  

>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 31/79 (39%), Positives = 44/79 (55%)
 Frame = +3

Query: 561 YAVIIDAGSSGSRVLAYKFRVPFTVFSQANLDLVQEHFEQSKPGLSSFADDPAKGAETIV 740
           Y ++IDAGS+GSRV  Y+F          +  L +E F+  +PGLSSFA DP   A ++ 
Sbjct: 134 YVLMIDAGSTGSRVHVYQFNN-----CNPSPKLEEEFFKMIEPGLSSFAGDPEGAAASLD 188

Query: 741 QLIKKAEYLIPLEKRXSTP 797
            L+  A   +P E R  +P
Sbjct: 189 PLLDYAMENVPEEYRRCSP 207


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
 Frame = +3

Query: 561 YAVIIDAGSSGSRVLAYK--FRVPFTVFSQAN-LDLVQEHFEQS-------KPGLSSFAD 710
           Y + IDAGSSGSR+L Y   +    ++  +   L L++             +PG+SSFA+
Sbjct: 5   YGIFIDAGSSGSRLLIYSWDYDTDSSLSDKVKKLPLIETGIGDGGKWSLKVQPGISSFAN 64

Query: 711 DPAK-GAETIVQLIKKAEYLIPLEKRXSTP 797
           +P   G + + +L+  A + IP +    TP
Sbjct: 65  NPKHVGKKHLKELLDFAAHAIPKDVHKETP 94


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 660 VQEHFEQSKPGLSSFADDPAKGAETIVQLI 749
           + E  E S+ G+S   +DP++  E I Q+I
Sbjct: 233 IYEPPEDSEDGISEMNEDPSESGEMIEQVI 262


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 380 PLNPNSYSKQRYKTAKASEESIHSFDCF 463
           PLNPN Y  + +        S+ +F CF
Sbjct: 371 PLNPNGYKLESFIFDLFPSVSVENFGCF 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,352
Number of Sequences: 5004
Number of extensions: 48313
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)