Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_I23
(798 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0873 - 11991947-11992059,11992148-11992337,11992437-119926... 70 2e-12
07_03_1711 + 28909297-28909329,28909725-28910204,28910300-289104... 67 2e-11
11_04_0134 - 13812569-13812699,13814167-13814565,13814890-138149... 58 1e-08
11_01_0143 + 1177220-1177462,1177727-1177855,1178114-1178170,117... 53 3e-07
12_01_0145 + 1106432-1106674,1106941-1107069,1107312-1107368,110... 52 4e-07
11_01_0146 + 1224143-1224409,1224760-1224888,1225759-1225815,122... 52 4e-07
08_02_0784 + 21183223-21183654,21183892-21184065,21184158-211842... 50 2e-06
03_03_0140 + 14771293-14771821,14772343-14772455,14772723-147728... 42 8e-04
11_04_0136 - 13849051-13849181,13850649-13851047,13851372-138514... 39 0.004
11_01_0145 + 1204021-1204296,1204430-1204492,1204667-1204795,120... 36 0.037
10_06_0054 - 10122703-10122983,10123549-10125376 30 1.9
10_08_1055 + 22587122-22587501,22587578-22588097 29 5.7
02_02_0216 + 7958881-7959123,7959225-7959422,7959520-7960083 29 5.7
>03_02_0873 -
11991947-11992059,11992148-11992337,11992437-11992654,
11993409-11993503,11994201-11994406,11994658-11994750,
11994904-11994960,11995070-11995198,11996377-11996745
Length = 489
Score = 69.7 bits (163), Expect = 2e-12
Identities = 46/105 (43%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
Frame = +3
Query: 498 AGQSQWLDSIAKTLGYQSEYHYAVIIDAGSSGSRVLAYKFRVPFTVFSQANLDLVQ---- 665
A +W LG S YAVI DAGSSGSRV Y F NLDL+
Sbjct: 67 AAGRRWGPRAVSGLGDGST-RYAVIFDAGSSGSRVHVYCF--------DGNLDLLPIGKE 117
Query: 666 -EHFEQSKPGLSSFADDPAKGAETIVQLIKKAEYLIPLEKRXSTP 797
E F+Q KPGLS++A DP + A+++V L+++AE +IP+E R TP
Sbjct: 118 IELFKQKKPGLSAYAMDPQEAAKSLVSLLEEAEKVIPVELREQTP 162
>07_03_1711 +
28909297-28909329,28909725-28910204,28910300-28910428,
28910511-28910567,28910669-28910761,28911278-28911483,
28912757-28912898,28912981-28913170,28913263-28913369
Length = 478
Score = 66.9 bits (156), Expect = 2e-11
Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 5/84 (5%)
Frame = +3
Query: 561 YAVIIDAGSSGSRVLAYKFRVPFTVFSQANLDLVQ-----EHFEQSKPGLSSFADDPAKG 725
YAVI DAGSSGSRV ++F ANLDL+ E F Q KPGLS +A++P +
Sbjct: 135 YAVIFDAGSSGSRVHVFRF--------DANLDLLHIGDQIELFVQKKPGLSEYANNPQEA 186
Query: 726 AETIVQLIKKAEYLIPLEKRXSTP 797
A+++V L++ A+ ++P+E R TP
Sbjct: 187 AKSLVSLLEDAKRVVPVELRGQTP 210
>11_04_0134 -
13812569-13812699,13814167-13814565,13814890-13814981,
13815241-13815446,13815559-13815651,13815779-13815835,
13815928-13816056,13819704-13820024
Length = 475
Score = 57.6 bits (133), Expect = 1e-08
Identities = 32/79 (40%), Positives = 49/79 (62%)
Frame = +3
Query: 561 YAVIIDAGSSGSRVLAYKFRVPFTVFSQANLDLVQEHFEQSKPGLSSFADDPAKGAETIV 740
YAVI DAGS+GSRV ++F + + D+ E F + KPGLSS+A P + A +I
Sbjct: 71 YAVIFDAGSTGSRVHVFRFDKQMDLVKIGD-DM--ELFAKVKPGLSSYAGKPQEAANSIA 127
Query: 741 QLIKKAEYLIPLEKRXSTP 797
L++KA+ ++P + + TP
Sbjct: 128 PLLEKAKGVVPKQLQKRTP 146
>11_01_0143 +
1177220-1177462,1177727-1177855,1178114-1178170,
1178369-1178601,1178880-1178971,1179116-1179330,
1180153-1180161
Length = 325
Score = 52.8 bits (121), Expect = 3e-07
Identities = 30/79 (37%), Positives = 45/79 (56%)
Frame = +3
Query: 561 YAVIIDAGSSGSRVLAYKFRVPFTVFSQANLDLVQEHFEQSKPGLSSFADDPAKGAETIV 740
YAVI+DAGS+G+RV ++F + + D+ E F + PGLSS+A P A +I+
Sbjct: 45 YAVILDAGSTGTRVHVFRFDNKLDLLKVGD-DI--ELFAKVDPGLSSYAGRPQDAANSIL 101
Query: 741 QLIKKAEYLIPLEKRXSTP 797
L+ KA ++P TP
Sbjct: 102 PLLDKANTVVPTRLMNKTP 120
>12_01_0145 +
1106432-1106674,1106941-1107069,1107312-1107368,
1107501-1107799,1108078-1108169,1108314-1108528,
1108797-1108923,1109080-1109216
Length = 432
Score = 52.4 bits (120), Expect = 4e-07
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +3
Query: 561 YAVIIDAGSSGSRVLAYKFRVPFTVFSQA-NLDLVQEHFEQSKPGLSSFADDPAKGAETI 737
YAVI+DAGS+G+RV ++F + N++L F + PGLSS+A P A +I
Sbjct: 45 YAVILDAGSTGTRVHVFRFDNKLDLLKVGDNIEL----FAKVDPGLSSYAGRPQDAANSI 100
Query: 738 VQLIKKAEYLIPLEKRXSTP 797
+ L+ KA ++P TP
Sbjct: 101 LPLLDKANTVVPARLMNKTP 120
>11_01_0146 +
1224143-1224409,1224760-1224888,1225759-1225815,
1225903-1226201,1226474-1226565,1226946-1227160,
1227205-1227228,1227314-1227497,1227612-1227742
Length = 465
Score = 52.4 bits (120), Expect = 4e-07
Identities = 29/79 (36%), Positives = 47/79 (59%)
Frame = +3
Query: 561 YAVIIDAGSSGSRVLAYKFRVPFTVFSQANLDLVQEHFEQSKPGLSSFADDPAKGAETIV 740
YAVI+DAGS+G+RV ++F + + D+ E F + PGLSS+A P + A++I+
Sbjct: 53 YAVILDAGSTGTRVHVFRFDKKIDLLKIGD-DI--EVFAKVDPGLSSYAGRPQEAAKSIM 109
Query: 741 QLIKKAEYLIPLEKRXSTP 797
L+ +A + +P TP
Sbjct: 110 PLLDRANHAVPTWLMNKTP 128
>08_02_0784 +
21183223-21183654,21183892-21184065,21184158-21184265,
21184403-21184457,21184682-21184876,21185291-21185388,
21186133-21186329,21186408-21186678
Length = 509
Score = 50.4 bits (115), Expect = 2e-06
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +3
Query: 555 YHYAVIIDAGSSGSRV--LAYKFRVPFTVFSQANLDLVQEHFEQSKPGLSSFADDPAKGA 728
+ Y V+IDAGS+GSRV +AY+ + +D + ++ PGLSSFA DP
Sbjct: 37 HEYGVVIDAGSTGSRVHVIAYRSSSSSPASALPRIDWARTASMKAAPGLSSFASDPGGAG 96
Query: 729 ETIVQLIKKAEYLIPLEKRXST 794
++ L++ A +P E T
Sbjct: 97 RSLAPLLEFARRRVPPESWAET 118
>03_03_0140 +
14771293-14771821,14772343-14772455,14772723-14772830,
14772931-14772973,14773454-14773593,14774216-14774446
Length = 387
Score = 41.5 bits (93), Expect = 8e-04
Identities = 25/63 (39%), Positives = 34/63 (53%)
Frame = +3
Query: 561 YAVIIDAGSSGSRVLAYKFRVPFTVFSQANLDLVQEHFEQSKPGLSSFADDPAKGAETIV 740
+AVIID GS+GSR F DL + + PGLSSFAD+PA+ +++
Sbjct: 63 FAVIIDGGSTGSRAHV------FATGPGGRPDLARSAVMRVTPGLSSFADEPARAGDSLR 116
Query: 741 QLI 749
LI
Sbjct: 117 PLI 119
>11_04_0136 -
13849051-13849181,13850649-13851047,13851372-13851463,
13851723-13851928,13852041-13852133,13852261-13852317,
13852410-13852538,13882612-13882707
Length = 400
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +3
Query: 678 QSKPGLSSFADDPAKGAETIVQLIKKAEYLIPLEKRXSTP 797
Q KPGLSS+A P + A +I L++KA+ ++P + + TP
Sbjct: 32 QVKPGLSSYAGKPQEAANSIAPLLEKAKGVVPKQLQKRTP 71
>11_01_0145 +
1204021-1204296,1204430-1204492,1204667-1204795,
1205778-1205834,1205915-1206213,1206539-1206630,
1206747-1206961,1207142-1207325,1207447-1207541,
1208572-1208628,1209372-1209426,1209955-1210079
Length = 548
Score = 35.9 bits (79), Expect = 0.037
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 19/98 (19%)
Frame = +3
Query: 561 YAVIIDAGSSGSRVLAYKF-RV--------PFTVFSQANLDLVQEH------FEQSK--- 686
YAVI+DAGS+G+RV ++F R+ VF++ N L+ ++ + K
Sbjct: 56 YAVILDAGSTGTRVHVFRFDRMMDLLKIGDDIEVFAK-NKTLINKYRILIGYYFVVKINV 114
Query: 687 -PGLSSFADDPAKGAETIVQLIKKAEYLIPLEKRXSTP 797
PGLSS+A P + A +I L+ KA +++P TP
Sbjct: 115 VPGLSSYAGRPREAANSIQPLLDKAIHVVPNWLMKKTP 152
>10_06_0054 - 10122703-10122983,10123549-10125376
Length = 702
Score = 30.3 bits (65), Expect = 1.9
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 16/95 (16%)
Frame = +3
Query: 561 YAVIIDAGSSGSRVLAYKFRV--------PFTVFSQANL------DLVQEHFE--QSKPG 692
Y VI+D GS+G+RV Y++ V P + N L ++ +++PG
Sbjct: 100 YYVILDCGSTGTRVYVYEWSVNHDDGNTFPIALKPLGNAPKKKSGKLTGRAYQRMETEPG 159
Query: 693 LSSFADDPAKGAETIVQLIKKAEYLIPLEKRXSTP 797
L+ + TI L++ AE LIP TP
Sbjct: 160 LNKLVHNETGLKMTIEPLLRMAEKLIPRRAHKHTP 194
>10_08_1055 + 22587122-22587501,22587578-22588097
Length = 299
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 499 PANHNGSIASRRPSATRASTITL**STPV--RREVGYSLINSEFLLQYSV 642
P + N S RPS++ +S I L STPV + + G+ + + L Q V
Sbjct: 212 PTHRNALAGSTRPSSSNSSNIRLQDSTPVHHQSQTGHDRLTTTHLKQEDV 261
>02_02_0216 + 7958881-7959123,7959225-7959422,7959520-7960083
Length = 334
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 651 LDLVQEHFEQSKPGLSSFADDPAKGAETIVQLIKKAEYLIPLEKRXST 794
+D ++ + E + PG+ S AD A A V L+ + +PL +R ST
Sbjct: 116 IDKIKANVEAACPGVVSCADILALAAREGVNLLGGPSWEVPLGRRDST 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,135,593
Number of Sequences: 37544
Number of extensions: 272337
Number of successful extensions: 581
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -