Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_I23
         (798 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14104| Best HMM Match : GDA1_CD39 (HMM E-Value=0.016)               46   3e-05
SB_34671| Best HMM Match : GDA1_CD39 (HMM E-Value=6.1e-37)             42   8e-04
SB_51248| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_14104| Best HMM Match : GDA1_CD39 (HMM E-Value=0.016)
          Length = 197

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
 Frame = +3

Query: 549 SEYHYAVIIDAGSSGSRVLAYKFRVPFTVFSQANLDLVQEHFEQS-------KPGLSSFA 707
           S+Y Y +++D GSSGSR+  Y +  P     +  L + Q    +        KPG+SS+ 
Sbjct: 26  SQYSYGLVVDCGSSGSRIYIY-YWPPHNGNPEELLQIKQMKDSKGYPVRKKIKPGISSYN 84

Query: 708 DDPAKGAETIVQLIKKAEYLIPLEKRXSTP 797
           D P   +E +  L+  A + +P  K   TP
Sbjct: 85  DKPFNASEYLEPLLDFAAFHVPKHKHQETP 114


>SB_34671| Best HMM Match : GDA1_CD39 (HMM E-Value=6.1e-37)
          Length = 400

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 25/83 (30%), Positives = 38/83 (45%)
 Frame = +3

Query: 549 SEYHYAVIIDAGSSGSRVLAYKFRVPFTVFSQANLDLVQEHFEQSKPGLSSFADDPAKGA 728
           S   YAV+ DAGSSG+R   YK +   ++       +      ++ PGLS F D P+   
Sbjct: 25  STVKYAVMFDAGSSGTRCKVYKLQTRHSLRISDVSQIKVPKPNKATPGLSFFGDSPSGVG 84

Query: 729 ETIVQLIKKAEYLIPLEKRXSTP 797
             +  LI  A   +P + +   P
Sbjct: 85  PYLQPLIDAAINAVPSQYQSQAP 107


>SB_51248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1004

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 383 LNPNSYSKQRYKTAKASEESIHSFDCFGTSHNIFIGSVC 499
           LNPN  ++ +    KAS+  +H  + F  S N+F   +C
Sbjct: 725 LNPN-VNEPKEIPVKASKRHLHREEAFSESPNVFKSEIC 762


>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 639 SQANLDLVQEHFEQSKPGLSSFADDPAKGA 728
           S++NL+ V  HFEQ  P L   + D +K +
Sbjct: 610 SESNLESVAAHFEQKPPPLKRLSIDDSKSS 639


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,288,836
Number of Sequences: 59808
Number of extensions: 322983
Number of successful extensions: 821
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)