Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_I23
(798 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83113-2|CAB05544.1| 479|Caenorhabditis elegans Hypothetical pr... 54 1e-07
U39652-1|AAA80403.2| 552|Caenorhabditis elegans Abnormal cell m... 49 3e-06
AB126261-1|BAD02168.1| 552|Caenorhabditis elegans MIG-23 protein. 49 3e-06
U41007-12|AAA82272.1| 485|Caenorhabditis elegans Nucleoside tri... 49 4e-06
Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical p... 28 6.7
Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical p... 28 6.7
AF016446-5|AAC24163.1| 329|Caenorhabditis elegans Serpentine re... 28 8.9
>Z83113-2|CAB05544.1| 479|Caenorhabditis elegans Hypothetical
protein K08H10.4 protein.
Length = 479
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = +3
Query: 561 YAVIIDAGSSGSRVLAYKF-RVPFTVFSQANLDLVQEHFEQSKPGLSSFADDPAKGAETI 737
+ ++IDAGS+G+R+ YKF P + +E F++ KPGLSSFA P+ A+++
Sbjct: 43 FTIVIDAGSTGTRLHLYKFIHDPAIASHGMPFKVEKEIFQEVKPGLSSFAKSPSSAADSL 102
Query: 738 VQLIKKAEYLIPLEKRXSTP 797
L+++A +P TP
Sbjct: 103 EPLLQRARKEVPHFMWEKTP 122
>U39652-1|AAA80403.2| 552|Caenorhabditis elegans Abnormal cell
migration protein 23 protein.
Length = 552
Score = 49.2 bits (112), Expect = 3e-06
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Frame = +3
Query: 531 KTLGYQSEYHYAVIIDAGSSGSRVLAYKFRVPFTVFSQANLDLV----QEHFEQSKPGLS 698
K + E Y VI DAGS+G+R+ Y + + + ++ V + ++ PGLS
Sbjct: 34 KVIADDQERSYGVICDAGSTGTRLFVYNW-ISTSDSELIQIEPVIYDNKPVMKKISPGLS 92
Query: 699 SFADDPAKGAETIVQLIKKAEYLIPLEKRXSTP 797
+F PA+ AE + L++ AE IP EKR TP
Sbjct: 93 TFGTKPAQAAEYLRPLMELAERHIPEEKRPYTP 125
>AB126261-1|BAD02168.1| 552|Caenorhabditis elegans MIG-23 protein.
Length = 552
Score = 49.2 bits (112), Expect = 3e-06
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Frame = +3
Query: 531 KTLGYQSEYHYAVIIDAGSSGSRVLAYKFRVPFTVFSQANLDLV----QEHFEQSKPGLS 698
K + E Y VI DAGS+G+R+ Y + + + ++ V + ++ PGLS
Sbjct: 34 KVIADDQERSYGVICDAGSTGTRLFVYNW-ISTSDSELIQIEPVIYDNKPVMKKISPGLS 92
Query: 699 SFADDPAKGAETIVQLIKKAEYLIPLEKRXSTP 797
+F PA+ AE + L++ AE IP EKR TP
Sbjct: 93 TFGTKPAQAAEYLRPLMELAERHIPEEKRPYTP 125
>U41007-12|AAA82272.1| 485|Caenorhabditis elegans Nucleoside
triphosphatase protein 1 protein.
Length = 485
Score = 48.8 bits (111), Expect = 4e-06
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Frame = +3
Query: 522 SIAKTLGYQSEYHYAVIIDAGSSGSRVLAYKFRVPFTVFSQANLD-LVQEH---FEQSKP 689
S+ + ++ Y VI DAGSSG+R+ Y + P + N+D L+ E ++ P
Sbjct: 12 SVRSVVETKNNIKYGVICDAGSSGTRLFVYTLK-PLSG-GLTNIDTLIHESEPVVKKVTP 69
Query: 690 GLSSFADDPAKGAETIVQLIKKAEYLIPLEKRXST 794
GLSSF D P + E + L++ AE IP E+ T
Sbjct: 70 GLSSFGDKPEQVVEYLTPLLRFAEEHIPYEQLGET 104
>Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6a protein.
Length = 1067
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 639 SQANLDLVQEHFEQSKPGLSSFADDPAK 722
+Q+ LVQE FE+ KP + S +D A+
Sbjct: 41 TQSRFSLVQEEFEKLKPDIKSKKEDAAE 68
>Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6b protein.
Length = 1067
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 639 SQANLDLVQEHFEQSKPGLSSFADDPAK 722
+Q+ LVQE FE+ KP + S +D A+
Sbjct: 41 TQSRFSLVQEEFEKLKPDIKSKKEDAAE 68
>Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6a protein.
Length = 1067
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 639 SQANLDLVQEHFEQSKPGLSSFADDPAK 722
+Q+ LVQE FE+ KP + S +D A+
Sbjct: 41 TQSRFSLVQEEFEKLKPDIKSKKEDAAE 68
>Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6b protein.
Length = 1067
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 639 SQANLDLVQEHFEQSKPGLSSFADDPAK 722
+Q+ LVQE FE+ KP + S +D A+
Sbjct: 41 TQSRFSLVQEEFEKLKPDIKSKKEDAAE 68
>AF016446-5|AAC24163.1| 329|Caenorhabditis elegans Serpentine
receptor, class h protein22 protein.
Length = 329
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -3
Query: 253 FKTTNIKLKVYLIYRHVLIYHLL 185
F +IK KV++ YR+ L++H+L
Sbjct: 31 FSLVSIKSKVFVTYRYFLLWHVL 53
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,478,560
Number of Sequences: 27780
Number of extensions: 258121
Number of successful extensions: 530
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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