Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_I23
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   7.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   7.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   7.6  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 353 SSKKVKR*CPLNPNSYSKQR 412
           SS  +K   PLNP  Y K R
Sbjct: 2   SSLSLKDILPLNPKLYDKHR 21


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -1

Query: 705 QTMTAQVWTAQSALELSLGW 646
           Q MT  +W  QS  +  L W
Sbjct: 73  QIMTTNLWVEQSWYDYKLRW 92


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -1

Query: 705 QTMTAQVWTAQSALELSLGW 646
           Q MT  +W  QS  +  L W
Sbjct: 73  QIMTTNLWVEQSWYDYKLRW 92


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -1

Query: 705 QTMTAQVWTAQSALELSLGW 646
           Q MT  +W  QS  +  L W
Sbjct: 69  QIMTTNLWVEQSWYDYKLKW 88


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 748 INCTIVSAPFAGSSANDDSPGL 683
           I+C +  APF G+SAN ++  L
Sbjct: 5   ISCLV--APFPGASANSEAKRL 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,175
Number of Sequences: 438
Number of extensions: 3440
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)