Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_I18
(694 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces... 32 0.068
SPAC1399.04c |||uracil phosphoribosyltransferase |Schizosaccharo... 29 0.48
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3... 27 1.9
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 27 1.9
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S... 27 1.9
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 2.6
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 26 4.5
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 4.5
>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 32.3 bits (70), Expect = 0.068
Identities = 23/96 (23%), Positives = 44/96 (45%)
Frame = -2
Query: 684 ILTIPILMKDSLVCLQILIAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSS 505
I+ P+LM + L+ ++ R SS +FQTL + ++ F + + I+ K
Sbjct: 113 IINAPLLMLSFQMAFTSLMVKMYWRFSSVHFQTLRLASAIQLKKFIF-VKILGIVSKTYC 171
Query: 504 VYFQSLMTRTMMKNNLVYFRILTILIQMKDSSAYFP 397
+ F + + + L+ F IL + +K + FP
Sbjct: 172 LAFVPVSFYQISRGLLLPFTILLSFVLLKQKTRLFP 207
Score = 30.3 bits (65), Expect = 0.28
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Frame = -2
Query: 648 VCLQILIAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVYFQSL-MTRTM 472
V QI+ A ++ + + P+LM F L + + + SSV+FQ+L + +
Sbjct: 93 VSSQIVFAILVTILNKQALNIINAPLLMLSFQMAFTSLMVKMYWRFSSVHFQTLRLASAI 152
Query: 471 MKNNLVYFRILTILIQMKDSSAYFPSLMTRTMMRNNLVYFRILTILIQMKDSSAYF 304
++ +IL I+ K F + + R L+ F IL + +K + F
Sbjct: 153 QLKKFIFVKILGIV--SKTYCLAFVPVSFYQISRGLLLPFTILLSFVLLKQKTRLF 206
>SPAC1399.04c |||uracil phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 220
Score = 29.5 bits (63), Expect = 0.48
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = -2
Query: 621 ILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVY--FQSLMTRTMMKNNLVYF 448
++ RD + + L+ L KD+ +L P+L +SV Q+L+ + + + N+V+
Sbjct: 110 LVQRDETTFEAKLMFCKLPKDAQDRLVLLLDPLLATGNSVILAIQTLINKGIPEENIVFV 169
Query: 447 RILTILIQMKDSSAYFPSL 391
++ + + A FP L
Sbjct: 170 NLIACNEGITNVFAKFPKL 188
>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 449
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 246 TVSNYDSHXYSKMAYNLTLSHNSFHRMRNSFHYY 145
++SNY H Y + N++L S R++ SFH Y
Sbjct: 217 SLSNYQQHLYQVLTQNVSLRFCS--RLQCSFHKY 248
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 27.5 bits (58), Expect = 1.9
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Frame = -2
Query: 663 MKDSLVCLQILIAQILMRDSSAYFQTLII---PILMKDSSAYFQILTIPILMKDSSVYFQ 493
M D L I ++ + + + Q++I +++KDS LT +L + F+
Sbjct: 752 MVDLQSILLSCIKRLAIAEQPRFIQSIIYVFAKLIVKDSLGMMHFLTSSLLNEQGLTAFE 811
Query: 492 SLMTRTMMKNNLVYF----RILTILIQMKDSSAYFPSLMTRTMMRNNLV 358
LM T+ +N VYF I I I M ++ L+ ++ L+
Sbjct: 812 VLM--TVWCDNFVYFSNFKNISIICIAMTKIYSFDSPLLDSVQVKGELI 858
>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 609
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 63 QNGQQNYFSSCLLVLCFSAYXVQCR 137
Q +N F +C+ C+ Y QCR
Sbjct: 546 QENDENAFMNCMAEACYMPYIFQCR 570
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -2
Query: 306 FRNXSSTTVSXYDSQNCSSTTVSNYDSHXYSKMAYNLTLSHNS 178
++ SS S Y S++ STT N S AYN L H+S
Sbjct: 398 YKPKSSVNGSVYRSKSVKSTTSHNKVPERNSVPAYNEKLMHSS 440
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +1
Query: 292 RXVPEVSRAILHLDQDCQDPEVNQVIPHHGSGHQAREVSR--AILHLDQDCQDPEVN 456
R +PE + + ++QDC D + I + H A SR ++ D QD V+
Sbjct: 395 RNLPEYNDVPVVINQDCYDKLIKDCIDERLAKHMAHIFSRDPLVIFSDSILQDNSVS 451
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 4.5
Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 5/175 (2%)
Frame = -2
Query: 666 LMKDSLVCLQILIAQILMRDSSAYFQTLIIPI--LMKDSSAYFQILTIPILMKDSSVYFQ 493
++ S L I+ I + S + + + +IP + SS+ + + P+ SS
Sbjct: 642 IISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPS 701
Query: 492 S---LMTRTMMKNNLVYFRILTILIQMKDSSAYFPSLMTRTMMRNNLVYFRILTILIQMK 322
S + T + +N+ + + L M SSA S+ + T++ + T+L +
Sbjct: 702 SSSLVSTYSASLSNITHSSLS--LTAMSSSSAIPTSVNSSTLITASSSN----TLLSSIT 755
Query: 321 DSSAYFRNXSSTTVSXYDSQNCSSTTVSNYDSHXYSKMAYNLTLSHNSFHRMRNS 157
SSA SSTTVS S S+T S S +A +L LS +S + S
Sbjct: 756 SSSAIV---SSTTVSNISSNLPSATASSQSQLTNSSTLATSLYLSSSSSRTISTS 807
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,852,915
Number of Sequences: 5004
Number of extensions: 30935
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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