Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_I16
         (739 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.84 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.1  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   7.9  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   7.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = +3

Query: 489  SRTRSVWTSSPTN*KRPVSSPRTLTENPTRFRENWPSLKTNSKSP 623
            S T S W ++ T  +   + P T +        NWP+  T    P
Sbjct: 1045 STTTSPWWTTTTTRRTTTTRPTTTSTTTRPTTTNWPTQGTTIPPP 1089


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 513 SSPTN*KRPV-SSPRTLTENPTRFRENWPSLKTNSK 617
           +SPT    P  SSPR+++E+P   R+  P+ + NS+
Sbjct: 53  ASPTPGDVPTPSSPRSISEDPLNCRD-LPNSRCNSR 87



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/51 (23%), Positives = 22/51 (43%)
 Frame = +2

Query: 383  EKSEERSGTAQQKLLEAQQSADENNRMCKVLENRAQQDEERMDQLTNQLKE 535
            +K++E  G    K    ++   EN+   K+      +DE+     +N  KE
Sbjct: 855  DKAQEADGEVVVKKEVDEEERLENHTSVKIKREAEDRDEDERSFHSNGAKE 905


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 205 RGSPRTPEEARPGGGRPDPEQE 270
           RG PRTP + +   G+  P+++
Sbjct: 58  RGPPRTPLQPKLVAGKLKPKRQ 79


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 272 CSCSGSGLPPPGRASSGVRGLPRLPSQHG 186
           C   G   P PG  S  V G P + S HG
Sbjct: 131 CLSGGPKHPDPG--SLQVPGAPMMMSSHG 157


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,595
Number of Sequences: 336
Number of extensions: 2859
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)