Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_I14
         (918 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0815 - 19949584-19950111,19950210-19950632                       29   3.9  
05_01_0100 + 670297-670525,671344-671559,671653-671758,671890-67...    29   5.2  
12_02_0158 + 14575219-14575348,14575645-14575838,14576067-145762...    29   6.8  
02_04_0107 - 19804730-19805044                                         29   6.8  

>04_03_0815 - 19949584-19950111,19950210-19950632
          Length = 316

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 485 TYTRRCRIMEAFLWLLR*RSRHETFCNACDNASDRYP 375
           T  + CR+ EA + LL    RH   C AC+ A+D  P
Sbjct: 267 TSCKACRVAEASVLLLP--CRHLCLCGACEAAADACP 301


>05_01_0100 +
           670297-670525,671344-671559,671653-671758,671890-672229,
           672555-672839,672911-673033,673361-673435
          Length = 457

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +2

Query: 551 EQCAIMANYFR-W--KKGKRDEDVFYSEKPRSRSLDPRSLEISGIRL 682
           + C+I   Y R W  KKG R+ D+F  +    + +DP   ++   RL
Sbjct: 292 KDCSIQVTYGRFWSDKKGFREVDLFIKQADGKKIIDPEKQDVLSSRL 338


>12_02_0158 +
           14575219-14575348,14575645-14575838,14576067-14576210,
           14576388-14576408
          Length = 162

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 537 WNVLVNSVPLWRITSDGKREKEMRTSFIRRNRAAGR*IHVLWKLAGS 677
           W+V  N   LW   S    E  +   F+ R   AGR +  + +L GS
Sbjct: 89  WDVPYNPYLLWMYNSHMNVETRISVMFLIRKTQAGRCLQCIARLTGS 135


>02_04_0107 - 19804730-19805044
          Length = 104

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 887 NRGREWRHDEDPRMHXKLCVC*QARCRETTCVFQLVARQPCVDVLP 750
           NRGR+ RH +  R H + C   Q R   +     LV R+  V V P
Sbjct: 37  NRGRQGRHHQGRRGHRRRC---QGRRAPSIAASHLVRRRRLVTVKP 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,799,789
Number of Sequences: 37544
Number of extensions: 451266
Number of successful extensions: 1041
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)