Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_I14
         (918 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)                 29   4.0  
SB_59335| Best HMM Match : rve (HMM E-Value=0.0065)                    29   7.0  
SB_58| Best HMM Match : Prenyltrans (HMM E-Value=1.4e-16)              29   7.0  

>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
          Length = 903

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
 Frame = +3

Query: 192 KRTRFKRQKVLKVLKMY-EIFLSKCRLYEYESYMLR*FRIVKTRHAIHYAYLGPVTETNL 368
           ++ + +R+ V   L+++ +++  KCR Y  E ++   F   K +H        P+    +
Sbjct: 323 QKCKAERRYVSSRLEIHRQMYEEKCRAYSTEDFIS--FFTTKIQHLKDNLRSSPLLTMEM 380

Query: 369 -LLWISVACVVT----CITKRLVTATLSQQ--PKKCFHDPTPTCIGK 488
            ++     CV +    C         LSQQ  PK C  DP PT + K
Sbjct: 381 SVVPAQPQCVASFPEFCAVSVSYIRDLSQQSKPKSCILDPVPTSVLK 427


>SB_59335| Best HMM Match : rve (HMM E-Value=0.0065)
          Length = 1020

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 584 WKKGKR-DEDVFYSEKPRSRSLDPRSLEISGI 676
           W++ KR   DVF  E  R R +DP+++  + +
Sbjct: 190 WREAKRRHRDVFLREAQRQRGMDPKNIPFNAL 221


>SB_58| Best HMM Match : Prenyltrans (HMM E-Value=1.4e-16)
          Length = 713

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 256 VNVVCMNMNLICCG 297
           VN+VC  +N++CCG
Sbjct: 339 VNIVCSGVNIVCCG 352



 Score = 28.7 bits (61), Expect = 7.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 256 VNVVCMNMNLICCG 297
           VN+VC  +N++CCG
Sbjct: 346 VNIVCCGVNIVCCG 359



 Score = 28.7 bits (61), Expect = 7.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 256 VNVVCMNMNLICCG 297
           VN+VC  +N++CCG
Sbjct: 353 VNIVCCGVNIVCCG 366



 Score = 28.7 bits (61), Expect = 7.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 256 VNVVCMNMNLICCG 297
           VN+VC  +N++CCG
Sbjct: 360 VNIVCCGVNIVCCG 373



 Score = 28.7 bits (61), Expect = 7.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 256 VNVVCMNMNLICCG 297
           VN+VC  +N++CCG
Sbjct: 367 VNIVCCGVNIVCCG 380



 Score = 28.7 bits (61), Expect = 7.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 256 VNVVCMNMNLICCG 297
           VN+VC  +N++CCG
Sbjct: 374 VNIVCCGVNIVCCG 387



 Score = 28.7 bits (61), Expect = 7.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 256 VNVVCMNMNLICCG 297
           VN+VC  +N++CCG
Sbjct: 381 VNIVCCGVNIVCCG 394



 Score = 28.7 bits (61), Expect = 7.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 256 VNVVCMNMNLICCG 297
           VN+VC  +N++CCG
Sbjct: 388 VNIVCCGVNIVCCG 401


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,807,940
Number of Sequences: 59808
Number of extensions: 542019
Number of successful extensions: 1199
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2657535823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)