Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_I14
         (918 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   3.9  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.9  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   9.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   9.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   9.0  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = +1

Query: 1   ELINRTYSV---DNARPYTTLRNKQ 66
           EL NR   V   DNARP+T+L  +Q
Sbjct: 111 ELTNRKSVVFHHDNARPHTSLVTRQ 135


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = +1

Query: 1   ELINR---TYSVDNARPYTTLRNKQ 66
           EL NR    +  DNARP+T+L  +Q
Sbjct: 233 ELTNRKGVVFHHDNARPHTSLVTRQ 257


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein
          protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 76 RYSLVYFLTLYRDVH 32
          RY   Y   LY+DVH
Sbjct: 45 RYMFTYLHLLYQDVH 59


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 120 SRLNEYGKYYLNAAPRIRA 176
           +RLN YG  Y+   P++ A
Sbjct: 512 ARLNVYGLPYIRLIPKVTA 530


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 120 SRLNEYGKYYLNAAPRIRA 176
           +RLN YG  Y+   P++ A
Sbjct: 512 ARLNVYGLPYIRLIPKVTA 530


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,645
Number of Sequences: 438
Number of extensions: 4555
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)