Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_I13
         (813 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844...    48   7e-06
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855     46   4e-05
01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242           29   5.8  

>04_04_0407 -
           24983491-24983575,24983655-24984015,24984367-24984406,
           24984466-24984468
          Length = 162

 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 24/45 (53%), Positives = 28/45 (62%)
 Frame = +1

Query: 670 KALKAQRKVVKGEHGKRVRKIRXSVHFRRPKTFEPPRHPKYPRKS 804
           +ALKA + V  G   K  +KIR SV F RPKT +  R PKYPR S
Sbjct: 26  QALKAAKAVKSGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVS 70


>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
          Length = 152

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 22/45 (48%), Positives = 28/45 (62%)
 Frame = +1

Query: 670 KALKAQRKVVKGEHGKRVRKIRXSVHFRRPKTFEPPRHPKYPRKS 804
           +ALK  + V  G   ++ +KIR SV F RPKT +  R PKYPR S
Sbjct: 16  QALKVAKAVKSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVS 60


>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
          Length = 417

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 168 VSQNTGTCPESSCACPETSC 227
           ++++  TCP + C CPE  C
Sbjct: 116 ITEHEKTCPHAPCFCPEPGC 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,130,420
Number of Sequences: 37544
Number of extensions: 148373
Number of successful extensions: 415
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)