Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_I13
         (813 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24)              29   3.4  
SB_32271| Best HMM Match : Antimicrobial18 (HMM E-Value=1.6)           29   5.9  

>SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 23/45 (51%), Positives = 29/45 (64%)
 Frame = +1

Query: 670 KALKAQRKVVKGEHGKRVRKIRXSVHFRRPKTFEPPRHPKYPRKS 804
           KA KA++ V KG    + +K+R SV F RPKT    R+PKYPR S
Sbjct: 138 KAQKAKKAVQKGVRAAKTKKVRTSVKFHRPKTLSLRRNPKYPRTS 182


>SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24)
          Length = 416

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +3

Query: 552 CGNSSQNCQTQASSFQIEDCTEAQKDWD*GTKKSSETCY*ST*GSEEGCK 701
           CGN + NC  +A +   E  +    DW       +ETC      SEE C+
Sbjct: 129 CGNGTSNCNCEACTDFSEVISAELYDW----VPQNETCVVKNYSSEEACR 174


>SB_32271| Best HMM Match : Antimicrobial18 (HMM E-Value=1.6)
          Length = 154

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 780 PRRFKRLGSAEMHRXANFPYSLPMFTFYNLPLSL 679
           PRR +R+   ++ +  N P +  +F +YNL + L
Sbjct: 49  PRRCRRVSDEQVEKSPNEPKAQSLFLWYNLAIRL 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,508,128
Number of Sequences: 59808
Number of extensions: 165798
Number of successful extensions: 509
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)