Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_I12
         (596 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0DKT4 Cluster: Chromosome undetermined scaffold_54, wh...    33   3.9  
UniRef50_UPI0000D5764A Cluster: PREDICTED: similar to alpha isof...    33   5.1  
UniRef50_Q8L396 Cluster: Lipoate protein ligase A; n=2; Acholepl...    32   8.9  
UniRef50_A7C3Z3 Cluster: Putative uncharacterized protein; n=1; ...    32   8.9  

>UniRef50_A0DKT4 Cluster: Chromosome undetermined scaffold_54, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_54,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 631

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = -1

Query: 569 HINQLYRNTNYNTVLKTPSWVIGAIKILFSLAL-LYVSVRKRQNTSTVTTLSFLDNIYQI 393
           +I Q +  T +  +LK  + VI A+  + SLAL +Y+      + ST+   +FL  ++QI
Sbjct: 284 YITQNHAKTIWEAILKIFAIVISALVTILSLALNVYIQANYLNSKSTLGEGNFLKILFQI 343

Query: 392 IISL 381
           ++ L
Sbjct: 344 LLYL 347


>UniRef50_UPI0000D5764A Cluster: PREDICTED: similar to alpha isoform
           of regulatory subunit A, protein phosphatase 2; n=1;
           Tribolium castaneum|Rep: PREDICTED: similar to alpha
           isoform of regulatory subunit A, protein phosphatase 2 -
           Tribolium castaneum
          Length = 765

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = -3

Query: 507 HWRHKNIVFAGTLVRQCTKETKY*YSHDVKFFRQYLSNNNIFSLK 373
           HWR +  +    +    T  +++ + H++KFF QYL N+ I+S++
Sbjct: 421 HWRTRRNLLVAFMHISKTATSEF-FDHNLKFFYQYLLNDPIYSIR 464


>UniRef50_Q8L396 Cluster: Lipoate protein ligase A; n=2;
           Acholeplasmataceae|Rep: Lipoate protein ligase A -
           Acholeplasma laidlawii
          Length = 332

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -3

Query: 582 YFIYAHQSIISKYKLQHSPKD--AILGHWRHKNIVFAGTLVRQCTKETKY*YSHDVKFFR 409
           YF +A    + KY L+H  KD       WR K IV     V +      Y   H+VKFFR
Sbjct: 15  YFYFA----LEKYVLEHLLKDNETYFFTWRIKGIVSGKNQVIENEINIPYVKEHNVKFFR 70

Query: 408 QYLSNNNIFS 379
           +     ++++
Sbjct: 71  RPTGGGSVYA 80


>UniRef50_A7C3Z3 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. PS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. PS
          Length = 141

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 21/79 (26%), Positives = 39/79 (49%)
 Frame = -1

Query: 518 PSWVIGAIKILFSLALLYVSVRKRQNTSTVTTLSFLDNIYQIIISLV*SLFSKKTQ*TGS 339
           P+W    I ILF + +L+  + K   TST   +  L +I   ++ L+  LF +K   +  
Sbjct: 51  PTW--SGIFILFGVVILFFELLKSTKTSTAAQIEHLLSIMVFVVGLMLFLFLEKAGTSTF 108

Query: 338 LCVVFV*KLESD*LILLSV 282
           L +  +  L++   I +S+
Sbjct: 109 LIITLMALLDAGAGIFISI 127


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 533,525,063
Number of Sequences: 1657284
Number of extensions: 9806449
Number of successful extensions: 20259
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20259
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)