Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_I12
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    28   0.90 
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   6.3  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   6.3  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    25   8.4  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    25   8.4  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    25   8.4  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    25   8.4  

>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +1

Query: 13  ITFYSINITLYSSVCT*FLIHFYHEWSI*NCYRGKRKKAICIRLLSFRSCI---LRTQRN 183
           I F S+ IT++      F       W   +   GKR +++C  +LS +S     L   ++
Sbjct: 149 INFNSLLITIFGLASCVFSFGVRFLWQYLSAIAGKRARSLCFHVLSSKSSTFYSLTESKS 208

Query: 184 GLI 192
           GL+
Sbjct: 209 GLV 211


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 587 DNTLFMHINQLYRNTNYNT 531
           +N LFM  NQLYR   Y T
Sbjct: 350 ENELFMKQNQLYRTILYET 368


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 217 KTFRGISVCLSRVICSVLISVKTLNKIS*SLSNFQ 321
           +TF    + L+R   S  +S  +LN+++ S SNFQ
Sbjct: 641 ETFDKADIILNRSPTSKHLSTSSLNRVNSSNSNFQ 675


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 471 LVRQCTKETKY*YSHDVKFFRQYLS 397
           L++QCT  T Y  +   +FFR+ L+
Sbjct: 249 LLKQCTSVTTYENASKARFFRRMLN 273


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 471 LVRQCTKETKY*YSHDVKFFRQYLS 397
           L++QCT  T Y  +   +FFR+ L+
Sbjct: 249 LLKQCTSVTTYENASKARFFRRMLN 273


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 471 LVRQCTKETKY*YSHDVKFFRQYLS 397
           L++QCT  T Y  +   +FFR+ L+
Sbjct: 221 LLKQCTSVTTYENASKARFFRRMLN 245


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 471 LVRQCTKETKY*YSHDVKFFRQYLS 397
           L++QCT  T Y  +   +FFR+ L+
Sbjct: 249 LLKQCTSVTTYENASKARFFRRMLN 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,268
Number of Sequences: 5004
Number of extensions: 47703
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)