Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_I12
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0113 + 14774457-14774528,14774637-14774693,14774803-147748...    30   1.2  
03_06_0045 - 31259107-31259385,31259509-31259745,31260427-312604...    29   2.1  
08_02_1488 + 27485154-27485390,27485441-27485968                       29   2.8  
05_01_0527 - 4541922-4541987,4543996-4544130,4544674-4544941,454...    28   6.5  

>09_04_0113 +
           14774457-14774528,14774637-14774693,14774803-14774830,
           14775453-14775634
          Length = 112

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -1

Query: 503 GAIKILFSLALLYVSVRKRQNTSTVTTLSFLDNIYQI 393
           G + +LF++ALL +S+ + +  +  +T    DN+YQ+
Sbjct: 5   GRLLVLFAIALLAISIAEHKALAKGSTSEHDDNVYQV 41


>03_06_0045 -
           31259107-31259385,31259509-31259745,31260427-31260477,
           31260541-31260908,31260992-31261250
          Length = 397

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 497 WRQ*PKMASLGLCCNL 544
           WRQ PKMA++G CC L
Sbjct: 119 WRQRPKMAAVGSCCLL 134


>08_02_1488 + 27485154-27485390,27485441-27485968
          Length = 254

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 566 INQLYRNTNYNTVLKTPSWVIGAIKILFSLALLYVSVRK 450
           I Q Y+    +    TPSWV+ A K L+  A L +S+++
Sbjct: 35  IRQKYQKKGLDCTKPTPSWVLAATK-LYDFAYLLMSLQR 72


>05_01_0527 -
           4541922-4541987,4543996-4544130,4544674-4544941,
           4545429-4545751,4546096-4546212,4546309-4546422,
           4546613-4546786,4546848-4546999,4547133-4547298,
           4547387-4547525,4547622-4547814,4548084-4548166,
           4548250-4548365,4548878-4548947,4549151-4549272
          Length = 745

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -1

Query: 515 SWVIGAIKILFSLALLYVSVRKRQNTSTV 429
           ++V G + I+FS+ LLY ++R R   S++
Sbjct: 265 AYVNGLLGIIFSMGLLYTAIRSRSARSSL 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,427,989
Number of Sequences: 37544
Number of extensions: 238937
Number of successful extensions: 429
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)