Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_I12
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17502| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_54864| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)                   27   8.7  
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   8.7  

>SB_17502| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = -1

Query: 584 NTLFMHI----NQLYRNTNYNTVLKTPSWVIGAIKIL 486
           +TLF H+    N+++R T  NTV    SW + +I +L
Sbjct: 29  STLFCHVASVVNEIWRRTRANTVFLQESWNMKSITVL 65


>SB_54864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 584 NTLFMHINQLYRNTNYNTV--LKTPSWVIGAIKILFSLALLYV 462
           N +  HI        +N V  L+ P  ++GA  +LF L ++YV
Sbjct: 331 NVIEQHIQDFALQYTFNKVMLLQEPLLIVGAFYLLFLLVIIYV 373


>SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)
          Length = 648

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 241 IHLSP*KSYKSKAVLHESARFSVFLEYTIGMRAA*YRW 128
           IHL P  + +++ VL   AR   +   TIG RA   +W
Sbjct: 472 IHLHPGSTIENRVVLEYRARTIGYRARTIGYRAGMLKW 509


>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4002

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 73   HFYHEWSI*NCYRGKRKKAI 132
            H+ H ++I  CYR  RK+A+
Sbjct: 1345 HYIHHYTIIGCYRDTRKRAL 1364


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,765,314
Number of Sequences: 59808
Number of extensions: 318837
Number of successful extensions: 594
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)