Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_I08
         (911 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64140.1 68414.m07266 expressed protein similar to putative d...    29   4.3  
At1g62240.1 68414.m07021 expressed protein                             29   4.3  

>At1g64140.1 68414.m07266 expressed protein similar to putative
           disease resistance protein GB:CAB40943 GI:4586107 from
           [Arabidopsis thaliana]; weak similarity to Loricrin
           (Swiss-Prot:P23490) [Homo sapiens]
          Length = 646

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
 Frame = -3

Query: 762 VFHGG-----SDGRVAQSRGSRV---AHGGGSTVFHSGCNGGVAQS 649
           + HGG     S+G    ++GS +   AHGGG    HSGC  G   S
Sbjct: 376 ISHGGGRRCQSNGCTKGAQGSTMFCKAHGGGKRCTHSGCTKGAEGS 421


>At1g62240.1 68414.m07021 expressed protein
          Length = 227

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -3

Query: 756 HGGSDGRVAQSRGSRVAHGGGSTVFHSGCNGGVAQSRGS 640
           +G  DGRV+ S     + GGG +   SG  GG   S GS
Sbjct: 127 YGSGDGRVSSSGEYSASAGGGGSGEGSGGGGGGDGSSGS 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,508,571
Number of Sequences: 28952
Number of extensions: 73684
Number of successful extensions: 290
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)