Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_I07
         (799 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    27   0.13 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    27   0.23 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    27   0.23 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    27   0.23 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    27   0.23 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.92 

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 594 EAIDLHCWCLSQASLRPYLTNTCLLKAWLSFCLQNYLMC 478
           EA  +    L++ SL+ Y   TC LK W  FC +N   C
Sbjct: 36  EATKITLSSLAKGSLKQY---TCELKLWWEFCQRNGHNC 71


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 15/92 (16%), Positives = 39/92 (42%)
 Frame = +3

Query: 219  CSQMNTKNKSKKTKDLSQADELCIKSQEHLNETLANTLHINNINSNLTNGTSDHSNGSSE 398
            C+     ++     +++ + E+  K  +H+ +T+  + HI+   S   +   DH +  + 
Sbjct: 1122 CTHQKAGDEKASLINIADSLEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHLGAV 1181

Query: 399  VLSEKTDGQGETVNKVTNDVNSVQHNDTSNNF 494
                  +   ET ++  + V   + +D  N +
Sbjct: 1182 TEEGGDESANETDSETVSTVPQNKRDDLVNPY 1213


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 15/92 (16%), Positives = 39/92 (42%)
 Frame = +3

Query: 219  CSQMNTKNKSKKTKDLSQADELCIKSQEHLNETLANTLHINNINSNLTNGTSDHSNGSSE 398
            C+     ++     +++ + E+  K  +H+ +T+  + HI+   S   +   DH +  + 
Sbjct: 1122 CTHQKAGDEKASLINIADSLEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHLGAV 1181

Query: 399  VLSEKTDGQGETVNKVTNDVNSVQHNDTSNNF 494
                  +   ET ++  + V   + +D  N +
Sbjct: 1182 TEEGGDESANETDSETVSTVPQNKRDDLVNPY 1213


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 15/92 (16%), Positives = 39/92 (42%)
 Frame = +3

Query: 219  CSQMNTKNKSKKTKDLSQADELCIKSQEHLNETLANTLHINNINSNLTNGTSDHSNGSSE 398
            C+     ++     +++ + E+  K  +H+ +T+  + HI+   S   +   DH +  + 
Sbjct: 1122 CTHQKAGDEKASLINIADSLEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHLGAV 1181

Query: 399  VLSEKTDGQGETVNKVTNDVNSVQHNDTSNNF 494
                  +   ET ++  + V   + +D  N +
Sbjct: 1182 TEEGGDESANETDSETVSTVPQNKRDDLVNPY 1213


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 15/92 (16%), Positives = 39/92 (42%)
 Frame = +3

Query: 219  CSQMNTKNKSKKTKDLSQADELCIKSQEHLNETLANTLHINNINSNLTNGTSDHSNGSSE 398
            C+     ++     +++ + E+  K  +H+ +T+  + HI+   S   +   DH +  + 
Sbjct: 1122 CTHQKAGDEKASLINIADSLEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHLGAV 1181

Query: 399  VLSEKTDGQGETVNKVTNDVNSVQHNDTSNNF 494
                  +   ET ++  + V   + +D  N +
Sbjct: 1182 TEEGGDESANETDSETVSTVPQNKRDDLVNPY 1213


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 243  KSKKTKDLSQADELCIKSQEHLNETLANTLHINNINSNLTN 365
            K   +  L+   +LC K++ H N    +    +++N+N  N
Sbjct: 984  KKGSSHPLAALQKLCDKTETHTNNRTHSATSNSSVNANTNN 1024


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,421
Number of Sequences: 336
Number of extensions: 3624
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)