Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_I07
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    32   0.005
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          27   0.15 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.62 

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 32.3 bits (70), Expect = 0.005
 Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 2/109 (1%)
 Frame = +3

Query: 183 NKVADN-NVQNIKCSQMNT-KNKSKKTKDLSQADELCIKSQEHLNETLANTLHINNINSN 356
           N+ ADN N  N      N  K    +  D  Q D     ++++ N+   N  + N  N N
Sbjct: 434 NQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGN 493

Query: 357 LTNGTSDHSNGSSEVLSEKTDGQGETVNKVTNDVNSVQHNDTSNNFEGK 503
             NG   + N  +          G   N   N+ N    ND   +   K
Sbjct: 494 RQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRNDNQVHHSSK 542


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 309 NETLANTLHINNINSNLTNGTSDHSNGS 392
           N   +N  + NN N+N  NG +D+ NG+
Sbjct: 234 NTNASNNNNNNNNNNNNNNGANDNGNGN 261



 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/50 (20%), Positives = 24/50 (48%)
 Frame = +3

Query: 324 NTLHINNINSNLTNGTSDHSNGSSEVLSEKTDGQGETVNKVTNDVNSVQH 473
           +T+   N N+N +N  ++++N ++       +G G   +   N+ +   H
Sbjct: 226 STITAGNANTNASNNNNNNNNNNNNNNGANDNGNGNGASNNNNNGDMFCH 275



 Score = 21.8 bits (44), Expect = 7.6
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 321 ANTLHINNINSNLTNGTSDHSNGSSEVLSEKTDGQGETVNKVTNDV 458
           ANT   NN N+N  N  ++++NG+    ++  +G G + N    D+
Sbjct: 233 ANTNASNNNNNN--NNNNNNNNGA----NDNGNGNGASNNNNNGDM 272


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = +3

Query: 180 MNKVADNNVQNIKCSQMNTKNKSKKTKDLSQADELCIKSQEHLNE---TLANTLHINNIN 350
           +N+   + + N + S  NT+NKS    D+ +    C      L E    L +  HIN   
Sbjct: 169 INRKNSDYLDNQEVSMENTENKSCTDSDIEKYKMFCNLENVKLKELRIILEDIKHINT-R 227

Query: 351 SNLTNG 368
            N  NG
Sbjct: 228 HNTKNG 233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,198
Number of Sequences: 438
Number of extensions: 4408
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)