Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_I04
(810 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc... 276 3e-75
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 29 0.59
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 29 0.78
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc... 28 1.4
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 28 1.8
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 27 2.4
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 3.2
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 26 5.5
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe... 26 7.3
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 26 7.3
>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 192
Score = 276 bits (676), Expect = 3e-75
Identities = 127/191 (66%), Positives = 156/191 (81%)
Frame = +3
Query: 108 MPLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKAD 287
M LQ+ KPAP FK TAVVNG F++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A
Sbjct: 1 MSLQIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAAS 60
Query: 288 EFRKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETG 467
+F + +V+ STDS ++HLA+INTPRK+GGLG +NIPL++D SH++SRDYGVL E+ G
Sbjct: 61 KFAERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAG 120
Query: 468 IPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTI 647
+ FRGLF+ID K LRQITINDLPVGRSV+E LRL+ AFQF ++HGEVCPANW G+ TI
Sbjct: 121 VAFRGLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANWHKGSDTI 180
Query: 648 KPDTKAAQEYF 680
DTK ++YF
Sbjct: 181 --DTKNPEKYF 189
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 29.5 bits (63), Expect = 0.59
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 578 LHQPQGLLHRPPHGQVVDRDL-PEVLLVVDDEESSEGNARLLVQ 450
L Q Q L + ++ D DL PEV ++ +EES G +R L++
Sbjct: 115 LQQQQLLAEKDEENEIADNDLEPEVYDILYEEESKLGESRDLIR 158
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 29.1 bits (62), Expect = 0.78
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +3
Query: 33 FISKASHSPVLSVFVYYSK---VFSFNKMPLQMT--KPAPQFKATAVVNGEFKDISLSDY 197
FI+ S + + SVFV +F+ + L P P F+ + +G+F S +
Sbjct: 234 FIASYSLAEITSVFVLADGTACIFTLSSSTLLKLHQSPEPHFELISKYSGDFPWKSCTIL 293
Query: 198 KGKYVVLFFYPLDFTFVCPTE 260
K K V L YP TF TE
Sbjct: 294 KSKPVSLCVYPEKITFNWLTE 314
>SPAC12G12.10 |||WD repeat protein, human WDR21
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 420
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 504 QNLRQITINDLPVGRSVEET--LRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQE 674
+NL++I + LPVG +++ LR V T K+G++ P K+ + K E
Sbjct: 92 KNLKKINLRQLPVGTELQKIGWLREVNTIILTSKNGDILGCCLTPEDKSGVANEKYTSE 150
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.8
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
Frame = +3
Query: 36 ISKASHSPVLSVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGE--------FKDISLS 191
+S S S F+Y SF++ T +P+ TA+ FK +
Sbjct: 26 LSPIGDSKNTSSFIYLGNPISFHEYNYDETMVSPENVKTAIAGSAKDHETCRGFKKTGTT 85
Query: 192 DYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRK 299
YK F + D+T PT + S+ DEF K
Sbjct: 86 SYKD-----FVFSRDYTNWTPTFWVLLSQLIDEFLK 116
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 371 QAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRP 535
+A R+ H H + + H R S G HS +LH QA+P A ++P
Sbjct: 448 KAVRSARHRHYASLDEQGLHSLRNLSKTSGMNHSADFSLHEFGQADPFAYEIEKP 502
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.1 bits (57), Expect = 3.2
Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 9/154 (5%)
Frame = -3
Query: 574 TSRRVSSTDLPTGRSLIVICLRFCLSSMM---KSPRKGMPVSSSSTP*--SREMRCDLSL 410
TS V +T P S +V SS + +P V ++STP S + +
Sbjct: 1153 TSSTVVNTSTPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPI 1212
Query: 409 IRGMFMGPSPPCLRG-VLIQARCVKCESV---EAPSTSQPILRNSSAFSENAMISVGHTN 242
+ S P VL + + S+ P TS +L +S+ + + +++ T
Sbjct: 1213 TSSTVLNTSTPITSSSVLNSSTPITSSSILNSSTPITSSSVLNSSTPITSSTVVN-SSTP 1271
Query: 241 VKSKG*KNSTTYFPL*SDREMSLNSPLTTAVALN 140
+ S N T P+ S ++ ++P+T++ ALN
Sbjct: 1272 ITSSTALN--TSIPITSSSVLNSSTPITSSTALN 1303
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +3
Query: 15 QDPTVIFISKASHSPVLSVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVN 164
++ T +F KA + S +FSFN TKP+P +T N
Sbjct: 444 ENKTPVFSFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFN 493
>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 195
Score = 25.8 bits (54), Expect = 7.3
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Frame = +3
Query: 111 PLQMTKPAPQ--FKATAVVNGEFKDISLSDYKG-----------KYVVLFFYPLDFTFVC 251
P+ + KPA +T V DI+L D G K +V+F YP T C
Sbjct: 30 PVMLKKPAKDESVDSTIQVGDVIPDITLPDEDGTSIRLRDITANKGLVIFAYPKASTPGC 89
Query: 252 PTEIIAFSEKADEFRKIGCEVLGASTDS 335
+ F + + + EVLG S D+
Sbjct: 90 TKQGCGFRDNYPKIQASDYEVLGLSFDT 117
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 640 LAPGLQLAGHTSPCLSVNW 584
L P +L HT PC SV W
Sbjct: 174 LKPKYRLTKHTQPCTSVCW 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,666,814
Number of Sequences: 5004
Number of extensions: 50388
Number of successful extensions: 146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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