Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_I04
         (810 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)                   282   3e-76
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)             158   4e-39
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)             129   2e-30
SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)              80   2e-15
SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)                46   3e-05
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)           31   1.1  
SB_7173| Best HMM Match : dDENN (HMM E-Value=1.5e-08)                  29   4.5  
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_37636| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
          Length = 265

 Score =  282 bits (691), Expect = 3e-76
 Identities = 130/190 (68%), Positives = 155/190 (81%), Gaps = 4/190 (2%)
 Frame = +3

Query: 87  KVFSFNKMPLQMT---KPAPQFKATAV-VNGEFKDISLSDYKGKYVVLFFYPLDFTFVCP 254
           ++ SF++  +  T   KPAP F  TAV  +GEF D+ LSDYKGKYVVLFFYPLDFTFVCP
Sbjct: 39  RMMSFSRADMSKTAIQKPAPAFSGTAVNKHGEFIDLKLSDYKGKYVVLFFYPLDFTFVCP 98

Query: 255 TEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRIS 434
           TEIIAFS++ DEF+ I CEV+  S DS ++HLAW N PRK+GG+G +NIP++SD + +IS
Sbjct: 99  TEIIAFSDRVDEFKAINCEVIACSVDSEYSHLAWTNVPRKKGGIGNINIPILSDLTKQIS 158

Query: 435 RDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVC 614
           +DYGVL E+ G+  RGLFIIDDK  LRQITINDLPVGRSV+ETLRL+QAFQFTDKHGEVC
Sbjct: 159 KDYGVLLEDQGVALRGLFIIDDKGILRQITINDLPVGRSVDETLRLIQAFQFTDKHGEVC 218

Query: 615 PANWRPGAKT 644
           PA WRPGA T
Sbjct: 219 PAGWRPGADT 228


>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
          Length = 704

 Score =  158 bits (384), Expect = 4e-39
 Identities = 71/95 (74%), Positives = 83/95 (87%)
 Frame = +3

Query: 360 NTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLP 539
           N PRK+GG+G +NIP++SD + +IS+DYGVL E+ G+  RGLFIIDDK  LRQITINDLP
Sbjct: 3   NVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFIIDDKGILRQITINDLP 62

Query: 540 VGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKT 644
           VGRSV+ETLRL+QAFQFTDKHGEVCPA WRPGA T
Sbjct: 63  VGRSVDETLRLIQAFQFTDKHGEVCPAGWRPGADT 97


>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score =  129 bits (312), Expect = 2e-30
 Identities = 56/80 (70%), Positives = 69/80 (86%)
 Frame = +3

Query: 117 QMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFR 296
           Q++KPAP ++ TAVVNGEFK++ LSD++GKY+V FFYPLDFTFVCPTEIIAFS++ +EFR
Sbjct: 55  QISKPAPFWEGTAVVNGEFKELKLSDFEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFR 114

Query: 297 KIGCEVLGASTDSHFTHLAW 356
            I  EV+G S DS FTHLAW
Sbjct: 115 AINTEVVGCSVDSVFTHLAW 134



 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 36/41 (87%), Positives = 39/41 (95%)
 Frame = +3

Query: 480 GLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKH 602
           GLFIIDDK  LRQIT+NDLPVGRSV+ETLRLVQAFQ+TDKH
Sbjct: 135 GLFIIDDKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKH 175


>SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 34/47 (72%), Positives = 39/47 (82%)
 Frame = +3

Query: 540 VGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQEYF 680
           VGRSV+ETLRLVQAFQ+TDKHGEVCPA W+PG  TI PD    ++YF
Sbjct: 1   VGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGKDTIIPDPTQKKKYF 47


>SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)
          Length = 160

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 12/131 (9%)
 Frame = +3

Query: 318 GASTDSHFTHLAWINTPRKQG-----GLGPMNIPLISDKSHRISRDYGVLD----EETGI 470
           G S D   +H  W+    K            N P+I+D+   ++   G++D    +  G+
Sbjct: 3   GLSCDDAESHRGWVKDITKYNLEQNKSSAKFNYPIIADERRELAVKLGMVDPDEKDSKGL 62

Query: 471 PF--RGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAK- 641
           P   R +FII   + L+   +     GR+ +E LR++ + Q T       P +W+ G   
Sbjct: 63  PLTCRAVFIIGPDKKLKLSILYPATTGRNFDEILRVIDSLQLTATKKVATPVDWKLGGDC 122

Query: 642 TIKPDTKAAQE 674
            + P  K  +E
Sbjct: 123 MVIPSIKPEEE 133


>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
          Length = 1064

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +3

Query: 408 ISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLPVGR-SVEE--TLRLVQ 578
           + DKS    R +  LD+  GI   G  ++ +  N+ +ITIN+    +  ++   TL  V 
Sbjct: 137 VQDKSG--IRIFSDLDDAHGIIDFGKRLLTEDTNIIEITINNTSTTQVKIKRFSTLEEVP 194

Query: 579 AFQFTDKHG 605
            F F+DKHG
Sbjct: 195 EFSFSDKHG 203


>SB_7173| Best HMM Match : dDENN (HMM E-Value=1.5e-08)
          Length = 416

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 22/56 (39%), Positives = 28/56 (50%)
 Frame = +3

Query: 39  SKASHSPVLSVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGEFKDISLSDYKGK 206
           S +S SPVLSV    + V S +   +Q T   P F AT +  G F D  L+   GK
Sbjct: 204 SSSSRSPVLSVTDGIA-VQSSSTESVQPTLILPPFTATGLHTGSFYDDCLAVLSGK 258


>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1755

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +2

Query: 368 AQAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRPAR 541
           + AG     +    +R+ A H PR+   G G+ HS+P  +      +P     + P +
Sbjct: 18  SSAGEESLADSGEGRRENARHKPRVMIGGEGEKHSVPAVITIPSVTDPGVAEGRPPRK 75


>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3293

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/61 (29%), Positives = 24/61 (39%)
 Frame = +2

Query: 359 QHAAQAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRPA 538
           QH+     T P + SS  +Q  PH P  R   R        T H+   + PQ+      A
Sbjct: 784 QHSESVSETSP-QLSSTAQQTPPHSPATRHNARTSSPQSLATRHNAWTSSPQSPATLHNA 842

Query: 539 R 541
           R
Sbjct: 843 R 843


>SB_37636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/57 (29%), Positives = 21/57 (36%)
 Frame = +2

Query: 371 QAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRPAR 541
           Q GR RP++H      V  H PR R   R    S P +   R        H  +  R
Sbjct: 147 QTGRMRPYDHQRRGCIVRNHRPRDRQQSRRTARSPPHSTTDREDGTLAERHAPQAPR 203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,844,721
Number of Sequences: 59808
Number of extensions: 416900
Number of successful extensions: 1637
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1633
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)