Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_I03
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       31   0.012
AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    23   1.8  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   5.5  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 30.7 bits (66), Expect = 0.012
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 391 YLVYDENTGDHKTQHELSDGSVVRGGYSLIQ-PDGYIREVKYVAD 522
           Y+V   N   ++ +   SDG +V G Y ++   DG +R V+Y AD
Sbjct: 195 YVVEGRNYRKYRVEERTSDGFIV-GEYGVVSHDDGSLRGVRYTAD 238


>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 448 GSVVRGGYSLIQPDGYIREVKYVADDL 528
           G  +  GY L  PD ++R+     DD+
Sbjct: 81  GREIEVGYDLKSPDRFVRQFTICFDDV 107


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -3

Query: 175 PYCKYSTGTTSRPPCT 128
           PY K  T    RPP T
Sbjct: 445 PYYKLKTANNKRPPST 460


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,494
Number of Sequences: 336
Number of extensions: 3188
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)