Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_I03
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    29   0.48 
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    29   0.64 
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    28   1.1  
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    27   2.0  
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    26   6.0  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    26   6.0  
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    25   7.9  
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   7.9  

>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
 Frame = +1

Query: 397 VYDENTGDHKTQHELSDGSVVRGGYSLIQPDGYIREVKYVADDLTGFNAVVKKFLPVNVE 576
           + DE T   KT  +LSD   +     L + + +I  ++ V DDL    +  K+ L  +V+
Sbjct: 93  ILDELTRSSKTHQKLSDDYSLDIAEKLKKLESHIEALRKVYDDLYKKFSSEKETLLNSVK 152

Query: 577 K-KIEHHEKSHPDPPCHEVKNEQLKVETKTEHS 672
           + K+ +HE +  D      KN++ + E KT+ +
Sbjct: 153 RAKVSYHE-ACDDLESARQKNDKYR-EQKTQRN 183


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
 Frame = +1

Query: 628 VKNEQLKVET---KTEHSESHHAPIV 696
           VK+E L+ ET   KTEH++S+H P V
Sbjct: 129 VKDEGLRTETIVKKTEHADSNHQPAV 154


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = -1

Query: 348  YWNTGLICYYICSGRGY*LPRIYTGRSTWRD*IWYY*SXQGLQIFGLVVILLRRLMERHI 169
            +W T  I  Y+    GY  P  Y GR+ W   +W       +Q  G+ +ILL+ L  RH+
Sbjct: 2280 FWATSNIGLYL-PWAGYSGP--YLGRTLW---LWLG-VLDAIQSVGIGMILLQTLTRRHV 2332

Query: 168  VS 163
             S
Sbjct: 2333 AS 2334


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 22/72 (30%), Positives = 30/72 (41%)
 Frame = +1

Query: 382 EYSYLVYDENTGDHKTQHELSDGSVVRGGYSLIQPDGYIREVKYVADDLTGFNAVVKKFL 561
           +YSYL+    TG    Q      +V+ G + L Q    I E K V  D  G     KK +
Sbjct: 245 DYSYLLAMYGTGSELCQGFCRSSAVMGGTFMLGQAIDKIDESKIVLKD--GSTLSAKKIV 302

Query: 562 PVNVEKKIEHHE 597
               E K+ H +
Sbjct: 303 SSVDEGKLPHQQ 314


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
 Frame = +1

Query: 394 LVYDENTGDHKTQH-ELSDGSVVR---GGYSLIQPDGYIREVKYVADDLTGFNAVVKKFL 561
           L+Y    G    Q   LSD +++    G Y +I  +  I E+  V          +  F 
Sbjct: 153 LIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFKEVTKFLWPFT 212

Query: 562 --PVN---VEKKIEHHEKSHPDPPCHEVKNEQLK 648
             PV    +EKK++H  +      C E  NE +K
Sbjct: 213 LTPVKHSLMEKKVKHFNEGRKAGYCGEEINELIK 246


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 589 HHEKSHPDPPCHEVKNEQLKVETKTEHSESH 681
           HH  SH D P    + +Q  V + +E  + H
Sbjct: 307 HHHHSHDDDPSSPAEKKQNHVPSPSEKIQDH 337


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 164 VFNWHYFSSALYEYFRE*STSYNINCGD 81
           VFN H++SS + E   + +  +NI+  D
Sbjct: 198 VFNAHFYSSIMNEVAEKANAGFNISLSD 225


>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 556 FLPVNVEKKIEHHEKSHPDPPCHEVKNEQLKVETKTE-HSESH 681
           FL  + E  +      HP PP H   +  +KV  K++ H ++H
Sbjct: 73  FLASSCEITVRLSSGGHPSPPVHIYMSALIKVCKKSKPHLQTH 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,989
Number of Sequences: 5004
Number of extensions: 50508
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)