Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_I03
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0163 - 15249816-15249920,15250032-15250163,15250463-152506... 29 4.7
02_03_0387 - 18412064-18412144,18412280-18412361,18412922-184131... 29 4.7
09_02_0106 + 4347024-4347536,4349619-4349700,4350499-4350747,435... 28 6.2
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733... 28 6.2
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851... 28 8.2
07_03_0705 - 20846810-20848165 28 8.2
05_07_0334 - 29358823-29360247 28 8.2
04_01_0382 - 5076673-5077774,5078122-5078186 28 8.2
>09_04_0163 -
15249816-15249920,15250032-15250163,15250463-15250629,
15251259-15251448,15252530-15252661,15253275-15253382,
15253513-15253608,15253702-15253809,15253917-15254089,
15255026-15255401,15255887-15256030,15256125-15256799,
15256917-15256982,15257082-15257249
Length = 879
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/61 (31%), Positives = 24/61 (39%)
Frame = +1
Query: 502 EVKYVADDLTGFNAVVKKFLPVNVEKKIEHHEKSHPDPPCHEVKNEQLKVETKTEHSESH 681
E Y A+D+TG KF+ VN E H DP E N K + + H
Sbjct: 589 EGPYDAEDITGHTTDKTKFILVNYSNSSEEHNSQ--DPTQDESDNIPNKSTNQPKFECLH 646
Query: 682 H 684
H
Sbjct: 647 H 647
>02_03_0387 -
18412064-18412144,18412280-18412361,18412922-18413142,
18413387-18413745,18413834-18414443,18414546-18414605,
18414685-18414751,18414843-18414936,18415012-18415125,
18415242-18415308,18415386-18415551,18416587-18417080
Length = 804
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +1
Query: 481 QPDGYIREVKYVADDLTGFNAVVKKFLPVNVEKKIEHHEKSHPDPPCHE 627
+ D I DD++G AVVK+ V V K E E+ PD HE
Sbjct: 571 EDDDMIMSDTVAKDDMSGL-AVVKEETSVEVPVKNEEEEELKPDEIVHE 618
>09_02_0106 +
4347024-4347536,4349619-4349700,4350499-4350747,
4351594-4351646,4353064-4353159,4353289-4353423
Length = 375
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 502 EVKYVADDLTGFNAVVKKFLPVNVEKKIEHHEKSHP 609
E Y A+D+TG KF+ VN E H+ P
Sbjct: 318 EGPYDAEDITGHTTDKTKFILVNYSNSSEEHKSQDP 353
>07_03_1632 + 28271559-28271645,28272641-28272713,28273030-28273361,
28273455-28274791,28275451-28275848,28275963-28277644,
28277727-28277884,28278645-28278802,28279110-28279270,
28279826-28280014
Length = 1524
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Frame = +1
Query: 439 LSDGSVVRGGYSLIQP--DGYIREVKYVADDLTGFNAVVKKFLPVNVEKKIEH-HEKSHP 609
L+DGS ++ +++ D + E K L N N + ++ EKSHP
Sbjct: 1149 LTDGSSIQHRMAVLDTKGDSMVHENKRSVTSLQDRNGSTHYPPDGNPQSEVSFGKEKSHP 1208
Query: 610 DPPCHEVKN---EQLKVETKTEHSESHHAPI 693
H+++N + L K ESH AP+
Sbjct: 1209 KSNKHDMQNSKAQMLPSPLKESKVESHSAPL 1239
>09_02_0393 +
8510089-8510274,8510450-8510806,8510889-8511011,
8511209-8511523,8511576-8511682,8512559-8512629,
8512952-8513029,8513390-8513454,8514224-8514274,
8514373-8514414,8514785-8515105,8515154-8517880
Length = 1480
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 268 HMARLDLVLLILXGAADIWASCDPATAIDGAP 173
H RL + +LI+ D++ +P T +DG P
Sbjct: 360 HKERLSIDVLIIHPFVDLFCGGNPVTKVDGPP 391
>07_03_0705 - 20846810-20848165
Length = 451
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 229 GAADIWASCDPAT---AIDGAPYCKYSTGTTSRPPCTNTL 119
G++ IW C P T A P+ S+ T S+ PC ++L
Sbjct: 110 GSSLIWTQCAPCTECAARPAPPFQPASSSTFSKLPCASSL 149
>05_07_0334 - 29358823-29360247
Length = 474
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 48 VNIFVAVFILGVSAINVVTGASFSKVFVQGGREVVPVEYLQYGAPSI 188
VN F+AV + SA+ TG+ KV G + V V Y +G P +
Sbjct: 122 VNNFLAVLLGNRSAL---TGSGSGKVVASGPNDHVFVYYADHGGPGV 165
>04_01_0382 - 5076673-5077774,5078122-5078186
Length = 388
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 526 LTGFNAVVKKFLPVNVEKKIEHHEKSHPDP--PCHEVKNEQLKVETKTEHSE 675
L G N +V+ LP +EKK+ + ++ PD H++ +++ K + HSE
Sbjct: 272 LDGRNKLVEYRLPPKIEKKVVNEQRYVPDTRYVLHDI-DQEAKEQALLYHSE 322
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,170,504
Number of Sequences: 37544
Number of extensions: 327327
Number of successful extensions: 849
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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