Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_I03
(699 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11642| Best HMM Match : LIM (HMM E-Value=1.4) 31 0.90
SB_7382| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_58744| Best HMM Match : ResIII (HMM E-Value=0.14) 30 2.1
SB_27544| Best HMM Match : ResIII (HMM E-Value=0.14) 30 2.1
SB_11259| Best HMM Match : Peptidase_S8 (HMM E-Value=0) 29 2.7
SB_5448| Best HMM Match : C1q (HMM E-Value=0.032) 29 2.7
SB_58837| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_23746| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_31943| Best HMM Match : ResIII (HMM E-Value=1.6) 29 4.8
SB_29335| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_32262| Best HMM Match : CHAD (HMM E-Value=6.1) 28 6.3
SB_17225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_11642| Best HMM Match : LIM (HMM E-Value=1.4)
Length = 906
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 481 QPDGYIREVKYVADDLTGFNAVVKKFLPVNVEKKIEHHEKSHPDPP 618
QPD EV D F+A +++ P ++ + +EHH K++P P
Sbjct: 751 QPDSQQLEVFREEWDGVAFDAAIEQAHPSDMWRLVEHHRKNYPRLP 796
>SB_7382| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1120
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 481 QPDGYIREVKYVADDLTGFNAVVKKFLPVNVEKKIEHHEKSHPDPP 618
QPD EV D F+A +++ P ++ + +EHH K++P P
Sbjct: 859 QPDSQQLEVFREEWDGMAFDAAIEQAHPSDMWRLVEHHRKNYPRLP 904
>SB_58744| Best HMM Match : ResIII (HMM E-Value=0.14)
Length = 831
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 523 DLTGFNAVVKKFLPVNVEKKIEHHEKSHPDPP 618
D F+A +++ P +V + IEHH K++P P
Sbjct: 610 DGVAFDAAIEQAHPNDVRRLIEHHRKNYPRLP 641
>SB_27544| Best HMM Match : ResIII (HMM E-Value=0.14)
Length = 522
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 523 DLTGFNAVVKKFLPVNVEKKIEHHEKSHPDPP 618
D F+A +++ P +V + IEHH K++P P
Sbjct: 278 DGVAFDAAIEQAHPNDVRRLIEHHRKNYPRLP 309
>SB_11259| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
Length = 772
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = -1
Query: 531 CQIISYVFYFTNITIRLNKGVSSANH*PVAQLVLCFMITCVLIVH*I*IFVTGSVLFICD 352
CQ +YV + TN+T+ L S + LC++ LI+ I I VT +++FI
Sbjct: 345 CQGSTYVLFLTNVTLLLRPFSPSF----LIVAALCYIYCLHLIIVTITIIVTITIIFIAI 400
Query: 351 NYWN 340
+ N
Sbjct: 401 IFMN 404
>SB_5448| Best HMM Match : C1q (HMM E-Value=0.032)
Length = 524
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 81 VSAINVVTGASFSKVFVQGGREVVP-VEYLQYGAPSIAVAG 200
V+AI ++TG+ FS VF+ G R P + Y G +A +G
Sbjct: 198 VAAIRILTGSGFSAVFISGLRSNPPFLSYPLNGTQYLANSG 238
>SB_58837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 747
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 523 DLTGFNAVVKKFLPVNVEKKIEHHEKSHPDPP 618
D F+A +++ P ++ + IEHH K++P P
Sbjct: 569 DAVAFDAAIEQAHPDDLWRLIEHHRKNYPRLP 600
>SB_23746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 780
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 481 QPDGYIREVKYVADDLTGFNAVVKKFLPVNVEKKIEHHEKSHPDPP 618
+PD E+ D F+A +++ P ++ + IEHH K++P P
Sbjct: 512 RPDSQQLEMFREEWDGVAFDAAIEQAHPSDMWRLIEHHRKNYPRLP 557
>SB_31943| Best HMM Match : ResIII (HMM E-Value=1.6)
Length = 1053
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 481 QPDGYIREVKYVADDLTGFNAVVKKFLPVNVEKKIEHHEKSHPDPP 618
QPD +V D F+A +++ P ++ + +EHH K++P P
Sbjct: 634 QPDTQQLKVFREEWDGVAFDAAIEQAHPSDMWRLVEHHRKNYPRLP 679
>SB_29335| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 840
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 481 QPDGYIREVKYVADDLTGFNAVVKKFLPVNVEKKIEHHEKSHPDPP 618
QPD +V D F+A +++ P ++ + +EHH K++P P
Sbjct: 572 QPDTQQLKVFREEWDGVAFDAAIEQAHPSDMWRLVEHHRKNYPRLP 617
>SB_32262| Best HMM Match : CHAD (HMM E-Value=6.1)
Length = 402
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 481 QPDGYIREVKYVADDLTGFNAVVKKFLPVNVEKKIEHHEKSHPDPP 618
QPD EV D F+A +++ P + ++ +EHH K++P P
Sbjct: 247 QPDSQQLEVFREEWDGVAFDAAIEQAHP-SEQRLVEHHRKNYPRLP 291
>SB_17225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 481 QPDGYIREVKYVADDLTGFNAVVKKFLPVNVEKKIEHHEKSHPDPP 618
QPD EV F+A +++ P ++ + +EHH K++P P
Sbjct: 97 QPDSQQLEVFRGEWHGVAFDAAIEQAHPSDMWRLVEHHRKNYPRLP 142
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,071,487
Number of Sequences: 59808
Number of extensions: 393972
Number of successful extensions: 1169
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -