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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_I03
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ...    31   0.97 
At3g16200.1 68416.m02045 expressed protein                             29   3.0  
At4g10310.1 68417.m01696 sodium transporter (HKT1) identical to ...    29   3.9  
At1g30570.1 68414.m03740 protein kinase family protein contains ...    28   6.8  
At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /...    28   6.8  

>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
           (beta prime), putative contains 7 WD-40 repeats
           (PF00400) (1 weak); similar to (SP:O55029) Coatomer
           beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
           (SP:O55029) [Mus musculus]; similar to GI:298096 from
           [Homo sapiens]
          Length = 926

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 559 LPVNVEKKIEHHEKSHPDPPCHEVKNEQLKVETKTEHSESHH 684
           L V  E+ +E+ +  H +    E  NEQ   +   EH E HH
Sbjct: 843 LQVEEEESLENGDMDHEEVVAEENGNEQRNEDDVAEHVEEHH 884


>At3g16200.1 68416.m02045 expressed protein
          Length = 452

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 400 YDENTGDHKTQHELSDGSVVRGG 468
           YD  TGDH +  ++ D S +RGG
Sbjct: 292 YDTGTGDHYSLRQICDQSHIRGG 314


>At4g10310.1 68417.m01696 sodium transporter (HKT1) identical to
           sodium transporter AtHKT1 [Arabidopsis thaliana]
           gi|7716474|gb|AAF68393
          Length = 506

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = -1

Query: 561 QELFDNRVKPCQIISYVFYFTNITIRLNKGVSSANH*PVAQLVLCFMITCVLIVH*I*IF 382
           Q L  N + PC ++  ++    IT R   G    NH  +    L  +  CVL+   +  F
Sbjct: 237 QVLMGNTLFPCFLVLLIWGLYKITKRDEYGYILKNHNKMGYSHLLSVRLCVLLGVTVLGF 296

Query: 381 VTGSVLFICDNYWNT 337
           +   +LF C   W +
Sbjct: 297 LIIQLLFFCAFEWTS 311


>At1g30570.1 68414.m03740 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 849

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 237 SXQGLQIFGLVVILLRRLMERHIVSI 160
           S QGL  F   +++L RL  RH+VS+
Sbjct: 554 SQQGLAEFETEIVMLSRLRHRHLVSL 579


>At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus; similar to SEC14-like protein 2
           (Alpha-tocopherol associated protein) (TAP) (bTAP)
           (Fragment) (SP:P58875)  {Bos taurus}
          Length = 683

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 574 EKKIEHHEKSHPDPPCHEVKNEQLKVETKTEHSESHHAP 690
           E+K+E  +    +    EVK E+  +E +T+  E   AP
Sbjct: 126 EEKVEEKKTEETEEKKEEVKTEEKSLEAETKEEEKSAAP 164


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,746,085
Number of Sequences: 28952
Number of extensions: 261415
Number of successful extensions: 652
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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