BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P02_F_I03 (699 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 31 0.97 At3g16200.1 68416.m02045 expressed protein 29 3.0 At4g10310.1 68417.m01696 sodium transporter (HKT1) identical to ... 29 3.9 At1g30570.1 68414.m03740 protein kinase family protein contains ... 28 6.8 At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /... 28 6.8 >At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2 (beta prime), putative contains 7 WD-40 repeats (PF00400) (1 weak); similar to (SP:O55029) Coatomer beta' subunit (Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus musculus]; similar to GI:298096 from [Homo sapiens] Length = 926 Score = 30.7 bits (66), Expect = 0.97 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 559 LPVNVEKKIEHHEKSHPDPPCHEVKNEQLKVETKTEHSESHH 684 L V E+ +E+ + H + E NEQ + EH E HH Sbjct: 843 LQVEEEESLENGDMDHEEVVAEENGNEQRNEDDVAEHVEEHH 884 >At3g16200.1 68416.m02045 expressed protein Length = 452 Score = 29.1 bits (62), Expect = 3.0 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +1 Query: 400 YDENTGDHKTQHELSDGSVVRGG 468 YD TGDH + ++ D S +RGG Sbjct: 292 YDTGTGDHYSLRQICDQSHIRGG 314 >At4g10310.1 68417.m01696 sodium transporter (HKT1) identical to sodium transporter AtHKT1 [Arabidopsis thaliana] gi|7716474|gb|AAF68393 Length = 506 Score = 28.7 bits (61), Expect = 3.9 Identities = 20/75 (26%), Positives = 32/75 (42%) Frame = -1 Query: 561 QELFDNRVKPCQIISYVFYFTNITIRLNKGVSSANH*PVAQLVLCFMITCVLIVH*I*IF 382 Q L N + PC ++ ++ IT R G NH + L + CVL+ + F Sbjct: 237 QVLMGNTLFPCFLVLLIWGLYKITKRDEYGYILKNHNKMGYSHLLSVRLCVLLGVTVLGF 296 Query: 381 VTGSVLFICDNYWNT 337 + +LF C W + Sbjct: 297 LIIQLLFFCAFEWTS 311 >At1g30570.1 68414.m03740 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 849 Score = 27.9 bits (59), Expect = 6.8 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -1 Query: 237 SXQGLQIFGLVVILLRRLMERHIVSI 160 S QGL F +++L RL RH+VS+ Sbjct: 554 SQQGLAEFETEIVMLSRLRHRHLVSL 579 >At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO, N-terminus; similar to SEC14-like protein 2 (Alpha-tocopherol associated protein) (TAP) (bTAP) (Fragment) (SP:P58875) {Bos taurus} Length = 683 Score = 27.9 bits (59), Expect = 6.8 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = +1 Query: 574 EKKIEHHEKSHPDPPCHEVKNEQLKVETKTEHSESHHAP 690 E+K+E + + EVK E+ +E +T+ E AP Sbjct: 126 EEKVEEKKTEETEEKKEEVKTEEKSLEAETKEEEKSAAP 164 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,746,085 Number of Sequences: 28952 Number of extensions: 261415 Number of successful extensions: 652 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 630 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 652 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1496852856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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