Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_I02
(629 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17) 31 0.77
SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2) 30 1.8
SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_12804| Best HMM Match : TF_Otx (HMM E-Value=7) 29 4.1
SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33) 29 4.1
SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55) 29 4.1
SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7) 28 5.4
SB_933| Best HMM Match : ExoD (HMM E-Value=6) 28 7.2
SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_45939| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00051) 27 9.5
SB_7220| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_2980| Best HMM Match : DUF814 (HMM E-Value=2.10195e-44) 27 9.5
SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17) 27 9.5
SB_36923| Best HMM Match : FlaC_arch (HMM E-Value=0.34) 27 9.5
SB_20027| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_1743| Best HMM Match : DUF563 (HMM E-Value=3.7) 27 9.5
>SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)
Length = 415
Score = 31.1 bits (67), Expect = 0.77
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 287 GSIFPDDALSVSPASNHHL-IHRIRFLRACRERDVGIIRCSDFEL 156
GSIF D VS NH L + R + L C+ER++G D EL
Sbjct: 303 GSIFHDKTFIVSDLRNHVLRVFRQKGLTICKERNIGQRGGKDGEL 347
>SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)
Length = 878
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 210 QESDPMYEVMIGGWGNAKSVIRKN-RTKPDKVEIESPGILNGG 335
Q+ D MYEV+I + +RK+ R+ D E E PGI+ GG
Sbjct: 766 QQQDQMYEVLI------HNALRKSFRSDEDDDENEEPGIIRGG 802
>SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +3
Query: 204 GPQESDPMYEVMIGGWGNAKSVIRKNRT-KPDKVEIESPGILNGGEY 341
GP + + +G W S R +T P KV + PGI NG Y
Sbjct: 84 GPTQDCDVNSGEVGPWKEVPSCSRVGQTGDPSKVRVYGPGIENGLRY 130
>SB_12804| Best HMM Match : TF_Otx (HMM E-Value=7)
Length = 245
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +1
Query: 352 GFVGIAALSPLDARVKLFHSYLGLIPNLSQFTTSESAQAGVPQAPGKSKMERNSI 516
G G L P+ S G +P+L Q S + +P +PG+ + R ++
Sbjct: 93 GVPGAPTLVPIQRPAPSVPSPTGRVPHLDQIPHVPSGPSSLPSSPGEPLISRGTV 147
>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
Length = 717
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 629 YXCGMSCEGNVAVVRSAVIEFQRTRGDRSK 540
Y C SCE N + +AV F +TR R+K
Sbjct: 225 YLCHESCEENAGLFETAVGWFSQTRWQRTK 254
>SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)
Length = 2153
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +1
Query: 433 LSQFTTSESAQAGVPQAPGK-SKMERNS 513
L +FT + +++ G+P PGK S++ +NS
Sbjct: 448 LQEFTQTHASKGGIPSTPGKTSEVSKNS 475
>SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)
Length = 225
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 300 VEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEPFPV-YYV 452
+ I + GI + + FWV + S + G I W+DP+P V YY+
Sbjct: 1 LNIATSGITSAEKRMVFWVDFRSANLVLGSGATVIA--QWTDPDPLEVGYYI 50
>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
Length = 555
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 292 PIRLKLKAPEFLTEGNIVVFGFVG-IAALSPLDARVKLFHSYLG 420
P ++ K P L +G I+ GF+G ++AL ++LF G
Sbjct: 100 PYVIRPKGPRLLRQGTIMKAGFIGLVSALGVYACNLELFRRCAG 143
>SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/63 (26%), Positives = 23/63 (36%)
Frame = -2
Query: 574 SNSKEPEATGPNLYSNLSGVSNSAPSSIFQEXXXXXXXXXXXXXTGKGSGSDQDMNGIAS 395
SNS + N SN S SNS+ +S S S+ + N +S
Sbjct: 163 SNSSSSSNSSSNSNSNSSSSSNSSSNSNSSSNSSSSSNSSSNSSRSSSSSSNSNSNSSSS 222
Query: 394 PSR 386
SR
Sbjct: 223 SSR 225
>SB_45939| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00051)
Length = 575
Score = 27.5 bits (58), Expect = 9.5
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = +3
Query: 231 EVMIGGWGNAKSVIRKNRTKPDKVEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPF 410
+ + G +AKS+ + +P+K +IES LN + + +I AG + +A P
Sbjct: 247 QCQLAGTRSAKSIYFGSYYRPNKSDIESLDELNSSLLKMGTTLHKNNVILAG-DFDA-PD 304
Query: 411 ISWSDPE 431
I W +PE
Sbjct: 305 IDWVNPE 311
>SB_7220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 621 RDEL*GKRGSCAVRGNRIPKNQRRQVQTYTLTCPEYRIPLHL 496
R + G R AV G+ K Q T TCP+Y+ PLH+
Sbjct: 49 RGQTRGPREYEAVGGSGAEKGGEGQYAELTSTCPDYQ-PLHI 89
>SB_2980| Best HMM Match : DUF814 (HMM E-Value=2.10195e-44)
Length = 950
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 252 GNAKSVIRKNRTKPDKVEIESPGILNGGEYRGFWVR 359
GNA VI P+ +E E PG L + R W R
Sbjct: 784 GNAADVIDGAGAPPEGLEQEEPGPLRTAQSREAWTR 819
>SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17)
Length = 262
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +1
Query: 418 GLIPNLSQFTTSESAQA-GVPQAPGKSKMERNSILRTG*SISLDLSPLVLWNSITADRTT 594
G + L Q++ + + G+PQ K +R I I + ++P +W S +
Sbjct: 104 GKLDGLEQYSRRNNIRIDGIPQTEEKEDTDRLIIETIKAKIGIVIAPADIWRSHRVGHSK 163
Query: 595 ATFPSQLI 618
+ P Q+I
Sbjct: 164 GSTPRQII 171
>SB_36923| Best HMM Match : FlaC_arch (HMM E-Value=0.34)
Length = 240
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 363 DSGIISAGREGEAIPFISWSDPEPFPVYYVGVCTG 467
D G + G E I F+ WS + F VCTG
Sbjct: 200 DKGNVKMGNELSDISFVLWSVEQEFASNAGAVCTG 234
>SB_20027| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 470 PACA-DSDVVNWERFGIRPRYEWNSFTLASSGDNAAIPTNPKTT 342
P C ++ V + RP+ EW S ++ + D +A+P KTT
Sbjct: 84 PTCTGNTPEVKCKTIVARPKREWASGSVPNEKDESALPDAIKTT 127
>SB_1743| Best HMM Match : DUF563 (HMM E-Value=3.7)
Length = 249
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 284 SIFPDDALSVSPASNHHLIHRIRFLRAC 201
S+ P+ A+S++ S HH R FLR C
Sbjct: 154 SLHPEVAMSLATYSLHHFTQRRFFLRRC 181
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,484,904
Number of Sequences: 59808
Number of extensions: 431096
Number of successful extensions: 1151
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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