Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H23
         (657 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    31   0.008
AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase l...    21   6.7  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 31.1 bits (67), Expect = 0.008
 Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 7/146 (4%)
 Frame = +2

Query: 239 QNSSTIAPVTEPTQELVNYEALKYIVGRPFNLNCTLAVPLDSFEIVWKKNSVPLGEVAGL 418
           ++  T+  VT P +  +  +      GRP    C       +FE        P+  ++ L
Sbjct: 316 ESVETVLTVTAPLKAKIEPQVQTIDFGRPATFTC-------NFE------GNPIKTISWL 362

Query: 419 KERYELQNKGLTFQIKGRSNEDDYGNYTCGLKNQTGHIKAWM---VTGNVHAKMTKDA-- 583
           K+ + + +     +I+    ED  G Y C ++N     +A     + G       + A  
Sbjct: 363 KDGHPIDHNEAVLRIESVRKEDK-GMYQCFIRNDQESAEATAELKLGGRFEPPQIRHAFN 421

Query: 584 --NVVEGQNIXITCKLIGKPYSEVTW 655
              V  G ++ + C   G P  E+TW
Sbjct: 422 EETVQPGNSVFLKCIASGNPTPEITW 447



 Score = 25.8 bits (54), Expect = 0.31
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
 Frame = +2

Query: 482 DDYGNYTCGLKNQTG---HIKAWMVTGNVHAKMTKDANVVEGQNIXITCKLIGKPYSEVT 652
           +D G Y C   ++ G   H     V G    +  +   +V G  + + C   G P   V 
Sbjct: 484 NDGGLYRCVASSKVGSADHSARINVYGLPFVRSMEKQAIVAGGTLIVHCPFAGHPVDSVV 543

Query: 653 W 655
           W
Sbjct: 544 W 544



 Score = 24.2 bits (50), Expect = 0.96
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
 Frame = +2

Query: 491 GNYTCGLKNQTGHIKAWMVTG--NVHAKMT---KDANVVEGQNIXITCKLIGKPYSEVTW 655
           GNYTC L + +  +  +  +   NV  +      D    +G +  + CK  G P   VTW
Sbjct: 674 GNYTC-LASNSASVTTYTTSLFINVPPRWILEPTDKAFAQGSDAAVECKADGFPRPVVTW 732


>AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase like
           protein E1 protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +3

Query: 261 RSPSPPKNWS 290
           ++P PP+NW+
Sbjct: 17  KAPQPPENWT 26


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,601
Number of Sequences: 336
Number of extensions: 2843
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)