Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H23
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1770 - 29382508-29382591,29382901-29383041,29383134-293835...    31   1.1  
12_01_0314 - 2395113-2395760,2396151-2396738,2397218-2397252,239...    29   2.5  
03_02_0691 + 10432615-10433109,10433155-10433216,10433526-104335...    29   2.5  
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    29   3.3  
01_07_0189 + 41875088-41875149,41875322-41875392,41875809-418759...    28   5.7  
10_01_0111 + 1384737-1386215                                           27   9.9  
09_01_0155 - 2301903-2302151,2302334-2302491,2302651-2302819,230...    27   9.9  

>07_03_1770 -
           29382508-29382591,29382901-29383041,29383134-29383520,
           29383685-29383930,29385396-29385437,29385973-29386461
          Length = 462

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +1

Query: 370 DRMEEEQRASRRGGRPQGAVRAPEQGAHLPDQGPQ*RGRLRQL 498
           DR  E   A  R GR Q   + PE  A LP+  P  + RLR L
Sbjct: 29  DRKFEPPAAPSRVGRKQRKQKGPEAAARLPNVAPLSKCRLRLL 71


>12_01_0314 -
           2395113-2395760,2396151-2396738,2397218-2397252,
           2397546-2397632,2397913-2397985,2398648-2398714,
           2398795-2398931,2400196-2400217,2400733-2400807,
           2402281-2402365,2402605-2403334
          Length = 848

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = -1

Query: 390 LFFFHTISNESSGTARVQFKLNGRPTMYFKAS*LTSSWVGSVTGAIVDEFWALVRTPQAK 211
           L   HT+ ++ + T  V F++     + +K+    + W+G   G I D +W   R+P+ +
Sbjct: 343 LLLLHTMHSKVAATTHVSFRVVHFQDLVYKSFGEIAVWLGGQYG-IHDSWWDCGRSPKGR 401


>03_02_0691 +
           10432615-10433109,10433155-10433216,10433526-10433565,
           10434562-10434807,10435020-10435189,10435323-10435539,
           10435615-10435755,10435943-10436026
          Length = 484

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = +1

Query: 370 DRMEEEQRASRRGGRPQGAVRAPEQGAHLPDQGPQ*RGRLRQL 498
           DR  E   A  R GR Q   + PE  A LP   P  + RLR L
Sbjct: 31  DRKFEPPAAPSRVGRKQRKQKGPEAAARLPAVAPLSKCRLRLL 73


>01_05_0279 +
           20318440-20318688,20318785-20318931,20319449-20319611,
           20319770-20319887,20320607-20320676,20320774-20320854,
           20320924-20320959,20321129-20321149,20321586-20321642,
           20321716-20321827,20321905-20322178,20322454-20322556,
           20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
 Frame = +2

Query: 428 YELQNKGLTFQIKGRSNE------DDYGNYTCGLKNQTGHIKAW 541
           Y  + +GL F+I+   +E      D +G +T  +K +  H+KAW
Sbjct: 608 YVKKIRGLAFEIEDAVDEFTYKLEDKHGGFTAKMKKRIKHVKAW 651


>01_07_0189 +
           41875088-41875149,41875322-41875392,41875809-41875902,
           41876285-41876360,41877130-41877293,41877428-41877605,
           41877687-41877809,41877895-41877990,41878091-41878372
          Length = 381

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 343 SRRATGFV*DRMEEEQRASRRGGRPQGAVRAPEQGAHLPDQ 465
           +RR  G    R++     +++GG PQG V   E+  HL +Q
Sbjct: 20  ARRICGMA-SRIDANDHGNQQGGNPQGPVGTAERLEHLLNQ 59


>10_01_0111 + 1384737-1386215
          Length = 492

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +2

Query: 227 LTSAQNSSTIAPVTEPTQELVNYEALKY--IVGRPFNLNCTLAVPLDSFEIVWK 382
           +++ +N + + PV       V+  AL    + G P    CT  VP   F+++WK
Sbjct: 46  VSTPRNIARLPPVRPAAAARVDLVALPLPRVDGLPDGAECTNDVPSGKFDLLWK 99


>09_01_0155 -
           2301903-2302151,2302334-2302491,2302651-2302819,
           2303796-2304839,2305792-2306075,2306318-2307333,
           2307937-2308085
          Length = 1022

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 431 ELQNKGLTFQIKGRSNEDDYG 493
           E+QN G TF + G S+ED+ G
Sbjct: 194 EMQNDGATFLLDGGSSEDNLG 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,008,468
Number of Sequences: 37544
Number of extensions: 305322
Number of successful extensions: 796
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)