Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H23
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74120.1 68414.m08584 mitochondrial transcription termination...    29   2.7  
At2g39970.1 68415.m04911 peroxisomal membrane protein (PMP36) id...    29   3.6  
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    28   4.8  
At3g30710.1 68416.m03897 hypothetical protein similar to Arginin...    28   6.3  
At1g14750.1 68414.m01763 cyclin, putative (SDS) identical to cyc...    28   6.3  
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative...    27   8.3  
At1g09170.1 68414.m01024 kinesin motor protein-related similar t...    27   8.3  

>At1g74120.1 68414.m08584 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 445

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +2

Query: 359 DSFEIVWKKNSVPLGEVAGLKERYELQNKGLTFQIKGRSNEDDY 490
           D+F++VWK+  V L E+  ++++ E     + F I   ++  +Y
Sbjct: 301 DAFKVVWKEPRVILYEIEDIEKKIEFLTNRMGFHINCLADVPEY 344


>At2g39970.1 68415.m04911 peroxisomal membrane protein (PMP36)
           identical to 36kDa-peroxisomal membrane protein (PMP36)
           GI:15146342 from [Arabidopsis thaliana]
          Length = 331

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = -1

Query: 423 SLRPATSPRGTLFFFHTI-SNESSGTARVQFKLN-GRPTMYFKAS*LTSSWVGSVTGAIV 250
           SL    + +G  ++F+ +  N +  TA  + K   G  ++   AS L +++ GSV   + 
Sbjct: 70  SLAGTAASQGVYYYFYQVFRNRAEATALARKKKGLGDGSVGMFASLLVAAFAGSVNVLMT 129

Query: 249 DEFWALVRTPQAKNRRDK 196
           +  W +V   Q   +  K
Sbjct: 130 NPIWVIVTRMQTHRKMTK 147


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
           similarity to MRP-like ABC transporter gb|U92650 from A.
           thaliana and canalicular multi-drug resistance protein
           gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -3

Query: 361 IQWHGESAIQIERASNDVLQGLIIDQ 284
           + W G S IQ+ R+S+D+ + L++++
Sbjct: 195 LAWRGVSGIQVTRSSSDLQEPLLVEE 220


>At3g30710.1 68416.m03897 hypothetical protein similar to
           Arginine-tRNA-protein transferase 1 (EC
           2.3.2.8)(R-transferase 1) (Arginyltransferase 1)
           (Arginyl-tRNA--protein transferase 1)(SP:Q9Z2A5) {Mus
           musculus}; similar to MRP homologs in mycobacteria
           (SP:P53382), which belong to the MR?/NBP35 family of
           ATP-binding proteins.
          Length = 523

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +2

Query: 479 EDDYG--NYTCGLKNQTGHIKAWMVTGNVHAKMTKDANVVEGQNIXITCKLIGKPYSEVT 652
           ED+ G  N  C +K Q   +    V   V A    D  V EG+ I IT KLI   Y  ++
Sbjct: 420 EDEAGLANLLCHIKGQNYQVPG--VKNMVEAATYADMVVKEGREIAITNKLIALYYQHLS 477


>At1g14750.1 68414.m01763 cyclin, putative (SDS) identical to
           cyclin-like protein [Arabidopsis thaliana] GI:20302467;
           low similarity to SP|P30278 G2/mitotic-specific cyclin 2
           (B-like cyclin) (CycMs2 {Medicago sativa}; contains Pfam
           profiles PF00134: Cyclin, N-terminal domain, PF02984:
           Cyclin, C-terminal domain
          Length = 578

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 618 QVXLMFCPSTTLASLVILAC 559
           Q  L F PST  A+LV+LAC
Sbjct: 522 QTQLCFWPSTVAAALVVLAC 541


>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
          Length = 671

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 373 RMEEEQRASRRGGRPQGAVRAPEQGAHLPDQGPQ*RGRL 489
           + +++Q+  R GG  +GA+  P+Q + +  Q    RGR+
Sbjct: 492 QQQQQQQQQRPGGGRRGALPQPQQPSPMMQQQMHPRGRM 530


>At1g09170.1 68414.m01024 kinesin motor protein-related similar to
           GB:AAB61066
          Length = 1010

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +1

Query: 139 LDESENSEKHNYAISTVFAFISSIFSLRSSYECPKLVND 255
           LD+S+++ K++   S++ A + ++FS     + P +V D
Sbjct: 230 LDQSDSNTKNDGTASSIDAIVRAVFSDMKQEDIPVIVED 268


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,857,554
Number of Sequences: 28952
Number of extensions: 244685
Number of successful extensions: 628
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)