Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H21
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)               73   3e-13
SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.56 
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_16343| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_51443| Best HMM Match : DRAT (HMM E-Value=2.3)                      29   5.3  
SB_452| Best HMM Match : RVT_1 (HMM E-Value=9.9e-25)                   28   7.0  
SB_36351| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)                 28   9.2  

>SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)
          Length = 446

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
 Frame = +2

Query: 446 NSNMYFWYFPPL---SKNEAAPVLLWLQGGPGASSL-FGLFTEVGPLIASKDGFAKREYH 613
           +++M++W +      S+ E  P++LWLQGGPG SS  +G F E+GPL  +      R   
Sbjct: 43  SAHMFWWLYGARGEPSERENKPLILWLQGGPGGSSTGYGNFMELGPLDVN---LKLRNTS 99

Query: 614 WAKNYHLIFIDNPVGTGFSFTDKDEGYCTDETCIAKGL 727
           W +  +++F+DNPVG GFS+      Y T+ T IA+ L
Sbjct: 100 WVEVANVLFVDNPVGAGFSYVTDKGAYTTNVTGIAQDL 137


>SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +1

Query: 361 RPGTIKSVIDGNTWDRESRGILYS*REVQFKYVLLVFPAFIEERSCTGFAVAARR 525
           R  TI S   G  W R++  +  S     F Y++LV P F+  ++  GF     R
Sbjct: 372 RVHTILSTYAGAVWTRKTSHLTLSSWAFLFDYIVLVCPTFVYNKTYDGFGEGDNR 426


>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3762

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -1

Query: 594  KPSLLAISGPTSVKSPNKELAPGPPCSHSKTGAASFFDKGGKYQKYIFELNFSSTV 427
            K  L+A  G  S +SPNK++ P    SH  T +++         K++ +++  STV
Sbjct: 3313 KMKLVAYEGAPSKQSPNKDVLPKESYSHFST-SSTVTQTSTTQMKFVQQISSGSTV 3367


>SB_16343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 449

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = -1

Query: 624 FLAQ*YSLLAKPSLLAISGPTSVKSPNKELAPGPPCSHSKTGAASFFDKGGKYQKY 457
           F    Y  +  PSL+   GP  V    KEL      ++++      F K G Y KY
Sbjct: 293 FTGDYYFTITDPSLIGGKGPFKVADKWKELRTPIDAAYTRKDGRYVFFKDGFYWKY 348


>SB_51443| Best HMM Match : DRAT (HMM E-Value=2.3)
          Length = 259

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 445 QFKYVLLVFPAFIEERSCTGFAVAARR 525
           +F Y++L+FP F+  ++  GFA    R
Sbjct: 226 KFDYIVLIFPTFVYNKTYDGFAEGDNR 252


>SB_452| Best HMM Match : RVT_1 (HMM E-Value=9.9e-25)
          Length = 1486

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 103 NNYSIRNIILIIRTNCFKLLTRHDGCEMEASAERSAVC 216
           N+ ++  + L+ R   FKLLT  D C +  +++ ++ C
Sbjct: 464 NHCTVETVSLVPRMEAFKLLTEEDVCMLIKNSKCTSCC 501


>SB_36351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +2

Query: 239 PLNGAKFPNVYPRVKLDARPNDSAGDPLMLTPFLKNESIALAQELSRVSLTETLGIES 412
           P++  ++PNV  R  +  RPN      L +T  + NES    + L   S+T  LGI S
Sbjct: 43  PMSNLRYPNVTCRRSVLDRPNPGYVPDLFVTLGV-NESSGCFRLLPMKSVTVGLGISS 99


>SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)
          Length = 2376

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 437  EKFNSNMYFWYFPPLSKNEAAPVLLWLQGGP 529
            E+FN  +     PPL+ N   P   W +G P
Sbjct: 1684 ERFNRTLLAMLSPPLTDNSLPPSREWTKGAP 1714


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,574,029
Number of Sequences: 59808
Number of extensions: 466660
Number of successful extensions: 1735
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1734
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)