Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H20
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu...   158   7e-40
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    31   0.19 
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    29   0.77 
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    29   1.0  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    27   4.1  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    27   4.1  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    26   5.4  
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    26   5.4  
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    26   7.2  

>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 228

 Score =  158 bits (384), Expect = 7e-40
 Identities = 82/195 (42%), Positives = 116/195 (59%), Gaps = 1/195 (0%)
 Frame = +2

Query: 215 LPKTSTVETLHGSLPIQGLKVKAGTRVPAQVRFAHTDI-SYPDFSAYRRKETQDPTSKAN 391
           LP +ST  +L GS+    + +   T +       +TD    PDFS Y+ K T D +    
Sbjct: 19  LPVSSTASSLKGSM----MTIPKFTSIRT-----YTDSPEMPDFSEYQTKSTGDRS---- 65

Query: 392 ETIDERQSFTYLIXXXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKS 571
                 +  +Y +                  F++S SA+ADVLA++K E+ L++IPEGK+
Sbjct: 66  ------RVISYAMVGTMGALTAAGAQATVHDFLASWSASADVLAMSKAEVDLSKIPEGKN 119

Query: 572 VTFKWRGKPLFIRHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVP 751
           +  KW+GKP+FIRHRT +EI    +V + TLRDPQ D  R Q P+WLV+IGVCTHLGCVP
Sbjct: 120 LVVKWQGKPVFIRHRTPEEIQEANSVDISTLRDPQADSDRVQKPEWLVMIGVCTHLGCVP 179

Query: 752 VXNAGEFGGYYCPCH 796
           +  AG++GG++CPCH
Sbjct: 180 IGEAGDYGGWFCPCH 194


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 17/43 (39%), Positives = 28/43 (65%)
 Frame = +2

Query: 125 YFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTSTVETLHGS 253
           YF+S+T   A S +   ++PT +EK++ LPL   ST++T+  S
Sbjct: 699 YFRSNTSGSAKS-EGYYIIPT-TEKSLYLPLRNRSTIDTISHS 739


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +3

Query: 543 SWLKFQKESLSP--SNGEENHCLSVTGQQTKSRPRRLCLSTRSVTLSTTINVPKTPSGWS 716
           S+ K QKE  S   SN      L +  + T +   R+   TRS    +T   P  PSG S
Sbjct: 528 SFSKSQKEETSSNSSNSSGTRRLGLPQRATPASRERVLPYTRSQAFHSTSLPPSLPSGHS 587

Query: 717 *SAYVPT 737
            S  +P+
Sbjct: 588 PSIAIPS 594


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +2

Query: 77  YRNKMNSVVXAGHLAPYFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTSTV 235
           +R   +S +  G +AP     ++ +++   PL     PS   ++LP  ++ST+
Sbjct: 399 HRILSSSTINDGEVAPPLPQRSRTISSPNSPLSATVLPSSTPILLPRGRSSTL 451


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 787 TVVTPEFTSIGY-RHASQVGTYADHDQPLGVL 695
           T++T   +   Y ++ S  G +A+HD P+G+L
Sbjct: 138 TMITAGVSIFSYFQNTSSKGKHAEHDSPIGLL 169


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 696 KTPSGWS*SAYVPTWDACRXPMLVNSGVTT 785
           KTPS W+     P W+A + PM+ N   T+
Sbjct: 907 KTPS-WNNGTKTPAWNANQTPMVANGTNTS 935


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 23/80 (28%), Positives = 35/80 (43%)
 Frame = +2

Query: 185 TPSEKTVVLPLPKTSTVETLHGSLPIQGLKVKAGTRVPAQVRFAHTDISYPDFSAYRRKE 364
           TP +++   P+P  +       SLPI  L     T +PA    A +  S  D +    K+
Sbjct: 314 TPRKRSPSSPVPLLAKKREGSPSLPIPILPKMKDTSIPA-AEPASSTTSARDQTPSTPKD 372

Query: 365 TQDPTSKANETIDERQSFTY 424
              P S A  + +E+Q  TY
Sbjct: 373 VGSP-STAETSAEEKQMETY 391


>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +2

Query: 488 VSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLFIRHRTADEISTEKAVPV 655
           VS     ADV +L ++ + L E+P G +   +   + +F +HR  + +  E  +P+
Sbjct: 71  VSLEKREADVASLGEV-MDLEEVPRGITRQARQLNEYIFPKHRFRNHLVDEGKIPL 125


>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -3

Query: 637 GRD--FVCCPVTDKQWFSSPFEGDRLSFWNFSQLDFNLG*SQNISSR 503
           GRD  ++C   + K W  S  + ++ +   FS+L   LG    I  +
Sbjct: 155 GRDLAWICFRESGKHWMVSALDAEKRAIQRFSELFSGLGLEDRIEGK 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,280,105
Number of Sequences: 5004
Number of extensions: 67035
Number of successful extensions: 198
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)