Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_H20
(798 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26175| Best HMM Match : No HMM Matches (HMM E-Value=.) 137 2e-44
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_49569| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_15777| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028) 31 1.4
SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06) 29 4.4
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23) 29 4.4
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43) 29 5.8
SB_28628| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_26175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 137 bits (331), Expect(2) = 2e-44
Identities = 56/81 (69%), Positives = 67/81 (82%)
Frame = +2
Query: 554 IPEGKSVTFKWRGKPLFIRHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCT 733
I GK++ FKWRGKPLF+RHRTADEIS E+ V V +LR P+ D R ++ KWLV+IGVCT
Sbjct: 110 ITSGKNMVFKWRGKPLFVRHRTADEISEEQNVDVASLRHPEADADRVKDDKWLVLIGVCT 169
Query: 734 HLGCVPVXNAGEFGGYYCPCH 796
HLGCVP+ NAGE+GGYYCPCH
Sbjct: 170 HLGCVPISNAGEYGGYYCPCH 190
Score = 60.5 bits (140), Expect(2) = 2e-44
Identities = 33/78 (42%), Positives = 43/78 (55%)
Frame = +2
Query: 335 PDFSAYRRKETQDPTSKANETIDERQSFTYLIXXXXXXXXXXXXXXXXTHFVSSMSAAAD 514
PDF YRR T + K T R++FTYL+ +F+S+MSA+AD
Sbjct: 2 PDFGDYRRPSTSE-VGKTETTEIGRRAFTYLVVAGMGVTGVHAGKNLLVNFLSTMSASAD 60
Query: 515 VLALAKIEIKLAEIPEGK 568
VLA+AKIE+ L IPE K
Sbjct: 61 VLAMAKIEVDLNTIPEEK 78
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 32.3 bits (70), Expect = 0.47
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Frame = +3
Query: 567 SLSPSNGEENHCLS-VTGQQTKSRPRRLCLSTRSVTLSTTINVPKTPSGWS*SAYVPTWD 743
SL + E+H S V TK L + + T TT N+P T + T
Sbjct: 155 SLPMQHSTEHHSTSGVASPSTKQPSTALTTTKQPTTQQTTTNLPSTRQPTTNQQTTTTLP 214
Query: 744 ACRXPMLVNSGVTTVPAT 797
+ + P TT+P+T
Sbjct: 215 STKQPTTTQQTTTTIPST 232
>SB_49569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 213 GRTTVFSEGVGTTTRGFRLLATTWVEDLK 127
GR V++ V T TR + AT WVED+K
Sbjct: 52 GRPDVYATQVHTVTRSKKDAATIWVEDIK 80
>SB_15777| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 213 GRTTVFSEGVGTTTRGFRLLATTWVEDLK 127
GR V++ V T TR + AT WVED+K
Sbjct: 52 GRPDVYATQVHTVTRSKKDAATIWVEDIK 80
>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
Length = 3809
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 537 KSSWLKFQKESLSPSNGEENHCLSVTGQQTKSRPRRLCLSTRSVTLSTTINVPK 698
K + ++ + + G +N+ L +TGQ+T + +R +TL T +VPK
Sbjct: 245 KETEIRHRFRNSESDGGAKNNLLQITGQKTDNSVKRPIRGNIRITLVTKSSVPK 298
>SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06)
Length = 625
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 557 EFQPA*FQSWLKPKHQQPLTLMTQSG 480
+F P+ F ++L P+ Q P LM+ SG
Sbjct: 422 DFDPSEFDAYLNPEQQDPALLMSPSG 447
>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
Length = 1153
Score = 29.1 bits (62), Expect = 4.4
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Frame = +2
Query: 116 LAPYFKSSTQVVANSLKPLV---VVPTPSEKTVVLPLPKTSTVETLH--GSLPIQGLKVK 280
L P + A S PL + P+P+ P P S V+ H S P +K
Sbjct: 313 LTPQASMKQPIAAGSPTPLKGSSIPPSPNRSPAASPAPSPSAVKPFHPVSSAP-SAIKFP 371
Query: 281 AGTRVPAQVRFAHTDISYP 337
A VPA +S+P
Sbjct: 372 AKPNVPAPGTIMPAPVSHP 390
>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
Length = 1806
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +2
Query: 527 AKIEIKLAEIPEGKSVTFKWRGKPLFIRHRTADEISTEKAVPVDTLRDPQHDDQR 691
AK + E +GK+ + + KP ++ ++ D+ +E+ P DP+HD Q+
Sbjct: 907 AKPDQAKTEPDQGKTKPDQRKDKPDQVQAKSRDKPDSEQPQPDQEQTDPKHDGQK 961
>SB_28628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 28.3 bits (60), Expect = 7.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 747 THPKWVHTPITTNHL 703
THPK +TP+T NH+
Sbjct: 16 THPKLTYTPVTPNHI 30
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,142,706
Number of Sequences: 59808
Number of extensions: 521454
Number of successful extensions: 1534
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1530
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -