Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H20
         (798 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038618-8|AAB92071.1|  276|Caenorhabditis elegans Iron-sulfur p...   192   2e-49
Z81592-2|CAB04726.1|  407|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical...    29   3.9  
AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-couple...    29   5.1  
AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical...    29   5.1  
Z84574-8|CAE54891.1|  921|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z84574-7|CAB06544.3|  928|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AL022593-4|CAE54889.1|  921|Caenorhabditis elegans Hypothetical ...    28   6.7  
AL022593-3|CAA18635.3|  928|Caenorhabditis elegans Hypothetical ...    28   6.7  
AL021386-3|CAA16167.1|  330|Caenorhabditis elegans Hypothetical ...    28   8.9  

>AF038618-8|AAB92071.1|  276|Caenorhabditis elegans Iron-sulfur
           protein protein 1 protein.
          Length = 276

 Score =  192 bits (469), Expect = 2e-49
 Identities = 94/184 (51%), Positives = 121/184 (65%), Gaps = 1/184 (0%)
 Frame = +2

Query: 248 GSLPIQGLKVKAGTRVPAQVRFAHTDISYPDFSAYRRKETQDPTSKANETIDERQSF-TY 424
           G +   GL VK G  V ++ R AHTD+++PD S YRR  T++    A +T D+R++  T 
Sbjct: 59  GGVFTNGLAVK-GINVTSR-RLAHTDVTFPDMSNYRRDSTKNTQVPARDTEDQRRALPTA 116

Query: 425 LIXXXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLF 604
           L                    VS  + AAD  ALA IEI +A+IPEGK+ TF+WRGKP+F
Sbjct: 117 LYYGAGGVLSLWAGKEVVQTLVSYKAMAADQRALASIEINMADIPEGKTKTFEWRGKPVF 176

Query: 605 IRHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVXNAGEFGGYY 784
           ++HRT  EI+ EKAVPV  LR PQHDD+R Q  +W VVIGVCTHLGCVP+ +AG++GGYY
Sbjct: 177 VKHRTKAEIAKEKAVPVADLRHPQHDDERVQKDEWSVVIGVCTHLGCVPIADAGDYGGYY 236

Query: 785 CPCH 796
           CPCH
Sbjct: 237 CPCH 240


>Z81592-2|CAB04726.1|  407|Caenorhabditis elegans Hypothetical
           protein T16G1.2 protein.
          Length = 407

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = +2

Query: 26  EHQHYEK**KNXYLPIIYRNKMNSVVXAGHLAPYFKSSTQVVANSLKPLVVVPTP--SEK 199
           EH    +  +N   P+  +    +V   G  AP    + Q+      PLV  P P  +  
Sbjct: 164 EHNSINEIRENSIQPVRPKTFFQTVTANGSNAPP-NQNAQLPLQPQPPLVFTPQPPIAPP 222

Query: 200 TVVLPLPKTSTVETLHGSLPIQGL 271
           T  +P     T++ L  SLP QG+
Sbjct: 223 TFTMPSLVPQTIQQLPSSLPQQGI 246


>AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical
           protein Y54E2A.11a protein.
          Length = 725

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +2

Query: 197 KTVVLPLPKTSTVETLHGSLPIQGLKVKAGTRVPAQVRFAHTDISYPDFSAY 352
           +TV    P  S + T+H     QG+ +  G       RFAHT++ Y DFS +
Sbjct: 207 ETVFTWSPHGSYLSTIHK----QGIILWGGKDYARAHRFAHTNVQYIDFSPW 254


>AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-coupled
           neutral amino acidtransporter protein.
          Length = 728

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 632 STEKAVPVDTLRDPQHDDQ-RTQNPKWLVVIGVCTHLGCVPVXNAGEFGGYY 784
           STE A+ VD      +D   R +N KW+VVI  C+ L C+ +  +   G Y+
Sbjct: 472 STEIAL-VDVFCSCIYDQYPRFRNRKWIVVIAWCSVLYCIGLVFSTRAGYYW 522


>AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical
           protein Y46G5A.30 protein.
          Length = 728

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 632 STEKAVPVDTLRDPQHDDQ-RTQNPKWLVVIGVCTHLGCVPVXNAGEFGGYY 784
           STE A+ VD      +D   R +N KW+VVI  C+ L C+ +  +   G Y+
Sbjct: 472 STEIAL-VDVFCSCIYDQYPRFRNRKWIVVIAWCSVLYCIGLVFSTRAGYYW 522


>Z84574-8|CAE54891.1|  921|Caenorhabditis elegans Hypothetical
           protein F33E2.2b protein.
          Length = 921

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 604 YPSQDSRRNLDREGCACRHAP*PSARRSTYP 696
           YPS+++   L+ +GC C HA  P A+    P
Sbjct: 685 YPSRNAPHQLE-DGCCCAHARAPRAKSIAVP 714


>Z84574-7|CAB06544.3|  928|Caenorhabditis elegans Hypothetical
           protein F33E2.2a protein.
          Length = 928

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 604 YPSQDSRRNLDREGCACRHAP*PSARRSTYP 696
           YPS+++   L+ +GC C HA  P A+    P
Sbjct: 692 YPSRNAPHQLE-DGCCCAHARAPRAKSIAVP 721


>AL022593-4|CAE54889.1|  921|Caenorhabditis elegans Hypothetical
           protein F33E2.2b protein.
          Length = 921

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 604 YPSQDSRRNLDREGCACRHAP*PSARRSTYP 696
           YPS+++   L+ +GC C HA  P A+    P
Sbjct: 685 YPSRNAPHQLE-DGCCCAHARAPRAKSIAVP 714


>AL022593-3|CAA18635.3|  928|Caenorhabditis elegans Hypothetical
           protein F33E2.2a protein.
          Length = 928

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 604 YPSQDSRRNLDREGCACRHAP*PSARRSTYP 696
           YPS+++   L+ +GC C HA  P A+    P
Sbjct: 692 YPSRNAPHQLE-DGCCCAHARAPRAKSIAVP 721


>AL021386-3|CAA16167.1|  330|Caenorhabditis elegans Hypothetical
           protein F57E7.3 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 706 LGVLGTLIVVLRVTERVDRHSLLGRDFVCCP--VTDKQWF 593
           LG+ GTL ++ R T+  + H  +   F C P  + DK  F
Sbjct: 147 LGLTGTLAILFRTTDSRESHLKVLEKFPCLPKDIIDKPGF 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,329,810
Number of Sequences: 27780
Number of extensions: 386642
Number of successful extensions: 1176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)