Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_H20
(798 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g13430.1 68418.m01546 ubiquinol-cytochrome C reductase iron-s... 156 2e-38
At5g13440.1 68418.m01547 ubiquinol-cytochrome C reductase iron-s... 155 2e-38
At4g03280.2 68417.m00448 cytochrome B6-F complex iron-sulfur sub... 36 0.024
At4g03280.1 68417.m00447 cytochrome B6-F complex iron-sulfur sub... 36 0.024
At5g01110.1 68418.m00015 pentatricopeptide (PPR) repeat-containi... 31 1.2
At4g39830.1 68417.m05643 L-ascorbate oxidase, putative similar t... 29 2.7
At5g62910.1 68418.m07894 expressed protein predicted proteins, A... 28 8.3
At5g54370.1 68418.m06770 late embryogenesis abundant protein-rel... 28 8.3
At3g48070.1 68416.m05241 expressed protein 28 8.3
At2g27660.1 68415.m03352 DC1 domain-containing protein contains ... 28 8.3
>At5g13430.1 68418.m01546 ubiquinol-cytochrome C reductase
iron-sulfur subunit, mitochondrial, putative / Rieske
iron-sulfur protein, putative similar to
ubiquinol--cytochrome-c reductase from Solanum tuberosum
[SP|P37841], Nicotiana tabacum [SP|P51132] [SP|P51133];
non-consensus AT acceptor splice site at exon 2
Length = 272
Score = 156 bits (378), Expect = 2e-38
Identities = 79/181 (43%), Positives = 105/181 (58%), Gaps = 3/181 (1%)
Frame = +2
Query: 263 QGLKVKAGTRVPAQVRFAHTD---ISYPDFSAYRRKETQDPTSKANETIDERQSFTYLIX 433
QG ++ G+ VPA V T I Y D + + R DP+ +A F Y +
Sbjct: 67 QGNEIGFGSEVPATVEAVKTPNSKIVYDDHN-HERYPPGDPSKRA---------FAYFVL 116
Query: 434 XXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLFIRH 613
+ SMSA+ DVLALA +E+ L I G +VT KWRGKP+FIR
Sbjct: 117 SGGRFVYASVLRLLVLKLIVSMSASKDVLALASLEVDLGSIEPGTTVTVKWRGKPVFIRR 176
Query: 614 RTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVXNAGEFGGYYCPC 793
RT D+I +V V +LRDPQ D R +NP+WLVV+GVCTHLGC+P+ NAG++GG++CPC
Sbjct: 177 RTEDDIKLANSVDVGSLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDYGGWFCPC 236
Query: 794 H 796
H
Sbjct: 237 H 237
>At5g13440.1 68418.m01547 ubiquinol-cytochrome C reductase
iron-sulfur subunit, mitochondrial, putative / Rieske
iron-sulfur protein, putative similar to
ubiquinol--cytochrome-c reductase from Solanum tuberosum
[SP|P37841], Nicotiana tabacum [SP|P51132] [SP|P51133]
Length = 274
Score = 155 bits (377), Expect = 2e-38
Identities = 78/181 (43%), Positives = 105/181 (58%), Gaps = 3/181 (1%)
Frame = +2
Query: 263 QGLKVKAGTRVPAQVRFAHTD---ISYPDFSAYRRKETQDPTSKANETIDERQSFTYLIX 433
QG ++ G+ VPA V T I Y D + + R DP+ +A F Y +
Sbjct: 69 QGNEIGFGSEVPATVEAVKTPNSKIVYDDHN-HERYPPGDPSKRA---------FAYFVL 118
Query: 434 XXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLFIRH 613
+ SMSA+ DVLALA +E+ L I G +VT KWRGKP+FIR
Sbjct: 119 SGGRFVYASVLRLLVLKLIVSMSASKDVLALASLEVDLGSIEPGTTVTVKWRGKPVFIRR 178
Query: 614 RTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVXNAGEFGGYYCPC 793
RT D+I +V V +LRDPQ D R +NP+WL+V+GVCTHLGC+P+ NAG++GG++CPC
Sbjct: 179 RTEDDIKLANSVDVGSLRDPQEDSVRVKNPEWLIVVGVCTHLGCIPLPNAGDYGGWFCPC 238
Query: 794 H 796
H
Sbjct: 239 H 239
>At4g03280.2 68417.m00448 cytochrome B6-F complex iron-sulfur
subunit, chloroplast / Rieske iron-sulfur protein /
plastoquinol-plastocyanin reductase (petC) identical to
gi:9843639; identical to cDNA rieske iron-sulfur protein
precursor (petC) GI:5725449
Length = 210
Score = 36.3 bits (80), Expect = 0.024
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +2
Query: 695 QNPKWLVVIG---VCTHLGCVPVXNAGEFGGYYCPCH 796
+N K L G VCTHLGCV N E + CPCH
Sbjct: 124 ENDKTLATYGINAVCTHLGCVVPWNKAE-NKFLCPCH 159
>At4g03280.1 68417.m00447 cytochrome B6-F complex iron-sulfur
subunit, chloroplast / Rieske iron-sulfur protein /
plastoquinol-plastocyanin reductase (petC) identical to
gi:9843639; identical to cDNA rieske iron-sulfur protein
precursor (petC) GI:5725449
Length = 229
Score = 36.3 bits (80), Expect = 0.024
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +2
Query: 695 QNPKWLVVIG---VCTHLGCVPVXNAGEFGGYYCPCH 796
+N K L G VCTHLGCV N E + CPCH
Sbjct: 143 ENDKTLATYGINAVCTHLGCVVPWNKAE-NKFLCPCH 178
>At5g01110.1 68418.m00015 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 729
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +2
Query: 68 PIIYRNKMNSVVXAGHLAPYFKSSTQVVANSLKPLVVV 181
PI Y +N++ GHLA F+ ++++ ++KP V++
Sbjct: 550 PISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMI 587
>At4g39830.1 68417.m05643 L-ascorbate oxidase, putative similar to
SP|P14133 L-ascorbate oxidase precursor (EC 1.10.3.3)
(Ascorbase) {Cucumis sativus}; contains Pfam profile
PF00394: Multicopper oxidase
Length = 582
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/57 (21%), Positives = 27/57 (47%)
Frame = -1
Query: 210 RTTVFSEGVGTTTRGFRLLATTWVEDLK*GAKCPALTTEFILFR*IIGK*XFFHYFS 40
+ + +E V G R + T W + ++ +CP L E +++ ++ + + Y S
Sbjct: 81 KNSFMTENVAVHWHGIRQIGTPWFDGVEGVTQCPILPGEVFIYQFVVDRPGTYMYHS 137
>At5g62910.1 68418.m07894 expressed protein predicted proteins,
Arabidopsis thaliana
Length = 327
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 368 ESLCDGKPRNPGMKCQYERNVL 303
+++CDG R PG + YERN++
Sbjct: 281 KTICDGDGRCPGCRKPYERNMV 302
>At5g54370.1 68418.m06770 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein (GI:1350543)[Picea
glauca]
Length = 337
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 553 NSRRKVCHLQMERKTIVYPSQDSRRNLDREGCAC 654
NS+ KVC+ +R T + + N +R G AC
Sbjct: 54 NSKNKVCYADCDRPTCKSQCRMRKPNCNRPGSAC 87
>At3g48070.1 68416.m05241 expressed protein
Length = 319
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 368 ESLCDGKPRNPGMKCQYERNVL 303
+++CDG R PG + YERN +
Sbjct: 273 KTICDGDGRCPGCRKPYERNTI 294
>At2g27660.1 68415.m03352 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 718
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 157 QPETSGGRTNTLRENGRPALA 219
QP T GGR R NGRP +A
Sbjct: 639 QPRTMGGRPLQYRPNGRPNMA 659
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,477,269
Number of Sequences: 28952
Number of extensions: 364713
Number of successful extensions: 1051
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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