Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H19
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    33   0.036
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    31   0.25 
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    30   0.44 
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    27   3.1  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   4.1  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    26   7.2  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    26   7.2  

>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 33.5 bits (73), Expect = 0.036
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +3

Query: 207 PAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQLWK 323
           PAE+ +++L + D   +   S    H+ +LV+++++LWK
Sbjct: 305 PAEITNLVLTHLDAPSLCAVSQVSHHWYKLVSSNEELWK 343


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +3

Query: 192 SIYSLPAEVISIILKNNDCQEILNFSSTCKHFNELVNTD 308
           ++ +LP E++ II    D + +L+   TCK++ +L++ D
Sbjct: 30  TVLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDD 68


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
 Frame = +3

Query: 192 SIYSLPAEVISIILKN-----NDCQEILNFSSTCKHFNELVNTD 308
           +I  LP EV+ +IL+N     +D + + + + TCKHF + +  D
Sbjct: 111 NILKLPDEVLLVILENCIRDLHDLRYLSSIALTCKHFAKALRAD 154


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 325 SFHNCWSVFTNSLKCLQ-VELKLSISWQSLFFSIIEITSAGK 203
           S+  CWSVF  +LK L  VE +     + L +  I I  A +
Sbjct: 277 SWRECWSVFYETLKILSLVETRYEFEHRDLHWGNILIRKADR 318


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 435 VFSELKTMSPTHYCKRDDLTKQDVRDFFNVAI 530
           V  ++KT +P HYC R +  K + +   NV +
Sbjct: 33  VIFKVKTTAPKHYCVRPNSGKIEPKSTVNVQV 64


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 632 SKWFFACICICQFTSYFYK 576
           +KWFF C+C      +F K
Sbjct: 14  TKWFFCCVCTILTMPFFKK 32


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 322 FHNCWSVFTNSLKCLQVELKLSISW 248
           FHN WS  + S+  L V L L   W
Sbjct: 224 FHNVWSSSSTSVPILSVVLALFFIW 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,221,106
Number of Sequences: 5004
Number of extensions: 65419
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)