Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H19
         (803 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0268 - 2029007-2029464,2029521-2029615,2030815-2031077,203...    32   0.46 
10_08_0274 + 16426892-16427101,16427193-16427572,16427655-164279...    32   0.46 
09_02_0540 + 10410372-10411331                                         31   1.4  
08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899     29   3.3  
06_03_0636 + 22983898-22985043                                         29   3.3  
08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,443...    29   5.7  
07_03_0923 - 22617627-22617860,22618486-22618542,22618612-226187...    29   5.7  
03_02_0871 - 11978725-11978986,11979265-11979422,11979501-119797...    29   5.7  
08_01_0272 + 2200061-2200078,2200835-2202076,2202201-2202698,220...    28   7.6  
02_02_0333 + 9042393-9043610                                           28   7.6  

>11_01_0268 -
           2029007-2029464,2029521-2029615,2030815-2031077,
           2031154-2031279,2031404-2032996
          Length = 844

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
 Frame = +3

Query: 123 WSSKSITTTS*DLRKIHIMDEELSIYSLPAEVISIILKNNDCQE-ILNFSSTCKHFNELV 299
           W + S  T S D   +++    + I SL    +SI  K    +  +LNF  +C    ELV
Sbjct: 514 WFNLSSQTRSID--NVYLDVGHVPITSLRKLELSIAFKERKGRHALLNFFRSCTELKELV 571

Query: 300 NTDQQLWKEKLKELIPDAAFVVVESDCHDGDWLEEIKGFYYIKNYV 437
                LW+E       D  +   E D H  DW   +K    +K+++
Sbjct: 572 -----LWRE-------DKVYFEEECDVHSDDWSSALKDIACLKSHL 605


>10_08_0274 +
           16426892-16427101,16427193-16427572,16427655-16427927,
           16428315-16428390,16428476-16428655
          Length = 372

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 22/85 (25%), Positives = 39/85 (45%)
 Frame = +3

Query: 270 STCKHFNELVNTDQQLWKEKLKELIPDAAFVVVESDCHDGDWLEEIKGFYYIKNYVFSEL 449
           ST   F E   T    W++K++E+    +++      H G    E     Y+ + + S+L
Sbjct: 176 STLAPFYESDTTISAYWRDKIREMTESISYLCTRKVSHGGLANRE----SYVLD-LDSKL 230

Query: 450 KTMSPTHYCKRDDLTKQDVRDFFNV 524
           K ++   Y      T+ DV DFF++
Sbjct: 231 KLINVARYSTDGSTTRDDVVDFFDL 255


>09_02_0540 + 10410372-10411331
          Length = 319

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 183 EELSIYSLPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQLW 320
           EE    SLP++V+++IL+        +F+ TC+H+   V+     W
Sbjct: 2   EERDWSSLPSDVLAVILERLRWSSHPSFALTCRHWRSAVSPFYPAW 47


>08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899
          Length = 712

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 204 LPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQ 314
           LP E++ +I+ N    + + F + CK ++E++N  +Q
Sbjct: 365 LPVELLELIVSNLSLVDRIRFPTVCKAWSEVLNPIEQ 401


>06_03_0636 + 22983898-22985043
          Length = 381

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 339 LIPDAAFVVVESDCHDGD 392
           +IPD   VV+ SDCH GD
Sbjct: 327 VIPDGRVVVIGSDCHGGD 344


>08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,
            4437721-4437990,4438168-4438605,4438772-4439043,
            4439126-4439274,4439339-4439470,4439554-4439880,
            4439963-4440357,4440551-4440861,4441304-4441394,
            4441806-4441847
          Length = 1686

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 249  QEILNFSSTCKHFNELVNT-DQQLWKEKLKELIPDAAFVVVESDCHDGDWLEEIKGF 416
            QE+ + +    + N LV+  D +L+K +L+    D + VVV  DC   DW    + F
Sbjct: 904  QELQDATDFFSNNNVLVDLFDSKLYKGRLQ----DGSLVVVHMDCPTADWSRRTRQF 956


>07_03_0923 -
           22617627-22617860,22618486-22618542,22618612-22618768,
           22618875-22619014,22619642-22619777,22619874-22620142,
           22620272-22620492,22620648-22620707,22620859-22620915,
           22621008-22621405,22621929-22622000,22622098-22622169,
           22622246-22622317,22622574-22622645,22622738-22622867,
           22623065-22623170
          Length = 750

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 633 LTEMHYARIL-LRHLIHPFITSKWVQLEKKDQLDPEFVLN 749
           LT MH   +L + HLI    T ++ ++ K D++  +FV N
Sbjct: 670 LTRMHEKGLLCIAHLICSVSTGEYTRVHKTDEIQSDFVKN 709


>03_02_0871 -
           11978725-11978986,11979265-11979422,11979501-11979705,
           11979797-11980086,11980539-11980692,11980793-11980881,
           11981567-11981634,11982082-11982352
          Length = 498

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +3

Query: 558 INILQDFIKITSELADAYACKKPFTLTEMHYA--RILLRHLIHPFITSKWVQLEKKD 722
           IN LQD +KI  EL   ++ K PF++  + ++  +  LR ++      K V+  + D
Sbjct: 155 INSLQDEVKIIRELPQKFSRKVPFSMQPISWSSEKYYLRQILPLVRKHKVVRFSRTD 211


>08_01_0272 +
           2200061-2200078,2200835-2202076,2202201-2202698,
           2203316-2203345
          Length = 595

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 540 MSLAYAINILQDFIKITSELADAYACKKPFTLTEMHYARILLRHLIHPFITSKWVQ 707
           +S A+ + IL  FI ++S  A   A    F  T  H     +  L+HP    +W Q
Sbjct: 308 LSGAFILEILSVFIVVSSFWAYFMATVSDFLCTRCHDVIFSIVKLVHPESKPQWSQ 363


>02_02_0333 + 9042393-9043610
          Length = 405

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = +3

Query: 204 LPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQLWKEKLKE 338
           LP +++  +L       ++   S CK ++E+V+  +Q W + + +
Sbjct: 44  LPDDLLEKVLSFLPVASVIRSGSVCKRWHEIVHARRQTWSKMVPQ 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,442,338
Number of Sequences: 37544
Number of extensions: 337537
Number of successful extensions: 655
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)