Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H19
         (803 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   8e-04
SB_24188| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.63 
SB_53645| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  

>SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = +3

Query: 201 SLPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQLWKEKLKE 338
           SL +EV+SIIL     + +LN S TC+ F EL      LWK+  K+
Sbjct: 18  SLSSEVLSIILSYLPAKTLLNLSETCRRFKELCFECDTLWKDLCKQ 63


>SB_24188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 198 YSLPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQLW 320
           +SLP EV+ IILK    Q+++N      +   LV+    LW
Sbjct: 22  FSLPEEVLIIILKFLPAQDLVNIRLVSTNLKHLVDESPTLW 62


>SB_53645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 219 ISIILKNNDCQEILNFSSTCKHFNELVNTDQQLWKEKLKELIPDA 353
           + I++ ++D  E     ST  +  +   +DQ+ W +  +E IPD+
Sbjct: 58  VVIVVSSHDSSEEKRHLSTRYNLEKWPGSDQEKWTDSFQEKIPDS 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,582,727
Number of Sequences: 59808
Number of extensions: 430586
Number of successful extensions: 952
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)