Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_H19
(803 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40427-3|AAA81469.1| 320|Caenorhabditis elegans Hypothetical pr... 31 0.73
Z37139-2|CAA85486.1| 384|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z70286-3|CAA94296.1| 298|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z98853-4|CAB57905.1| 301|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z50006-2|CAD44148.1| 523|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z50006-1|CAA90301.1| 190|Caenorhabditis elegans Hypothetical pr... 28 6.8
U40419-6|AAL02445.2| 408|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z73103-5|CAA97422.1| 380|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical pr... 28 9.0
X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein. 28 9.0
X69016-1|CAA48781.1| 549|Caenorhabditis elegans ced-4 protein. 28 9.0
U21324-1|AAA62564.1| 549|Caenorhabditis elegans Cell death abno... 28 9.0
>U40427-3|AAA81469.1| 320|Caenorhabditis elegans Hypothetical
protein F43C9.1 protein.
Length = 320
Score = 31.5 bits (68), Expect = 0.73
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +3
Query: 189 LSIYSLPAEVISIILKNNDCQEILNFSSTCKHFNELV 299
+S++ LP+E++ + +N + Q+I S C+ FN ++
Sbjct: 1 MSMHQLPSEMLRSVFQNVNSQDIPKLRSVCQMFNSVI 37
>Z37139-2|CAA85486.1| 384|Caenorhabditis elegans Hypothetical
protein C14B1.3 protein.
Length = 384
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 201 SLPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQLWKE 326
++P E S I + D + +LN C FN+L+++D W E
Sbjct: 26 TVPNECFSPIFRRLDKKSLLNCQLACHRFNDLISSD-SFWIE 66
>Z70286-3|CAA94296.1| 298|Caenorhabditis elegans Hypothetical
protein K08C7.7 protein.
Length = 298
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 183 EELSIYSLPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQ 311
E I LP E+I +LKN +E+ + + TCK + L+ ++
Sbjct: 4 ENFPILELPPELILHVLKNYCYEELNDITVTCKTLHALIEENR 46
>Z98853-4|CAB57905.1| 301|Caenorhabditis elegans Hypothetical
protein R08A2.4 protein.
Length = 301
Score = 28.3 bits (60), Expect = 6.8
Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 7/153 (4%)
Frame = +3
Query: 204 LPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQ-QLWKEKLK-ELIPDAAFVVVE-S 374
+P V+ IL N Q IL CKHF + + Q + + E+ P+ +E
Sbjct: 1 MPELVMKNILGNVGLQSILKLRLVCKHFYDCIQLLQPNIHLNSISLEISPNLLICDIELK 60
Query: 375 DCHD-GDWLEEIKGFYYIKNYVFSELKTMSPTHYCKRDDLTKQDVRDFFNVAISTKMSL- 548
+C G + + Y++ + T K D + R+ FN+ + + +L
Sbjct: 61 ECQSIGVICRKTEDGYFLHR------RNRKLTKLIKTQDF-YTEFREVFNLLLKYQRALL 113
Query: 549 -AYAINILQD-FIKITSELADAYACKKPFTLTE 641
++IN D IKI EL K+ F E
Sbjct: 114 QRFSINFESDGDIKIFEELVHILKAKRRFLQVE 146
>Z50006-2|CAD44148.1| 523|Caenorhabditis elegans Hypothetical
protein T07C5.1c protein.
Length = 523
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -1
Query: 647 MHFSQSKWFFACICICQFTSYFY---KILKNVDSIGQTH 540
MH+SQ +W F C+ S+ KIL SI ++H
Sbjct: 1 MHYSQMRWMFFCLTALLHGSFIVNAAKILVYCPSISKSH 39
>Z50006-1|CAA90301.1| 190|Caenorhabditis elegans Hypothetical
protein T07C5.1b protein.
Length = 190
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -1
Query: 647 MHFSQSKWFFACICICQFTSYFY---KILKNVDSIGQTH 540
MH+SQ +W F C+ S+ KIL SI ++H
Sbjct: 1 MHYSQMRWMFFCLTALLHGSFIVNAAKILVYCPSISKSH 39
>U40419-6|AAL02445.2| 408|Caenorhabditis elegans Hypothetical
protein C27F2.7 protein.
Length = 408
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 204 LPAEVISIILKNNDCQEILNFSSTCKHFNEL 296
LP I I+ D Q +LN S TC H +L
Sbjct: 130 LPDTDICQIMSFLDAQSLLNLSQTCSHLRQL 160
>Z73103-5|CAA97422.1| 380|Caenorhabditis elegans Hypothetical
protein C08F8.6 protein.
Length = 380
Score = 27.9 bits (59), Expect = 9.0
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 432 YVFSELKTMSPTHYCKRDDLTKQDVRDFFNVAISTKMSLAYA-INILQDFIKITSELADA 608
YV +ELK H+C +D K V D FN + T + L+ A + + K + A +
Sbjct: 60 YVLNELKKAGGRHFCNIED--KGQV-DNFNYVVMTFVGLSLADLRAISPTKKFSMGTAIS 116
Query: 609 YACKKPFTLTEMH 647
A + L +MH
Sbjct: 117 IARQSLEALEDMH 129
>Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical
protein F17E5.1a protein.
Length = 961
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +3
Query: 567 LQDFIKITSELADAYACKKPFTLTEMHYARILLRHLIHPFITSKWVQLEKKDQLDPEFVL 746
+ + I+I L Y C+ T+ +HY I+ ++ I + VQ + E+V+
Sbjct: 64 IDEEIRICQNLQHPYICRLEKTINSVHYRHIIFENMEGNDICFEIVQRASNGFVFSEYVV 123
Query: 747 NFFV-QWVD-IDKMHS 788
+ + Q +D +D H+
Sbjct: 124 SHYTRQLLDALDYCHT 139
>X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein.
Length = 961
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +3
Query: 567 LQDFIKITSELADAYACKKPFTLTEMHYARILLRHLIHPFITSKWVQLEKKDQLDPEFVL 746
+ + I+I L Y C+ T+ +HY I+ ++ I + VQ + E+V+
Sbjct: 64 IDEEIRICQNLQHPYICRLEKTINSVHYRHIIFENMEGNDICFEIVQRASNGFVFSEYVV 123
Query: 747 NFFV-QWVD-IDKMHS 788
+ + Q +D +D H+
Sbjct: 124 SHYTRQLLDALDYCHT 139
>X69016-1|CAA48781.1| 549|Caenorhabditis elegans ced-4 protein.
Length = 549
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/73 (21%), Positives = 36/73 (49%)
Frame = +3
Query: 117 SGWSSKSITTTS*DLRKIHIMDEELSIYSLPAEVISIILKNNDCQEILNFSSTCKHFNEL 296
SG + KS D+ + +++L + V S++LK C +++ +T F+++
Sbjct: 193 SGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDV 252
Query: 297 VNTDQQLWKEKLK 335
V + W ++L+
Sbjct: 253 VQEETIRWAQELR 265
>U21324-1|AAA62564.1| 549|Caenorhabditis elegans Cell death
abnormality protein4, isoform a protein.
Length = 549
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/73 (21%), Positives = 36/73 (49%)
Frame = +3
Query: 117 SGWSSKSITTTS*DLRKIHIMDEELSIYSLPAEVISIILKNNDCQEILNFSSTCKHFNEL 296
SG + KS D+ + +++L + V S++LK C +++ +T F+++
Sbjct: 193 SGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDV 252
Query: 297 VNTDQQLWKEKLK 335
V + W ++L+
Sbjct: 253 VQEETIRWAQELR 265
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,699,044
Number of Sequences: 27780
Number of extensions: 364017
Number of successful extensions: 825
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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