Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H17
         (665 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RLB9 Cluster: Elongation factor Tu family, putative; ...    34   3.5  
UniRef50_Q2NH51 Cluster: Conserved hypothetical membrane-spannin...    33   6.2  

>UniRef50_Q7RLB9 Cluster: Elongation factor Tu family, putative; n=5;
            Plasmodium (Vinckeia)|Rep: Elongation factor Tu family,
            putative - Plasmodium yoelii yoelii
          Length = 1308

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
 Frame = -2

Query: 664  NTVYIYFIIKQINKNILHFCYKKYPKQQ--IQSS*IC*TFLKFTSTTYRYGNK--YYLSC 497
            N+ YI+  +  + +N++HF  K Y   Q  +++  I  TFL ++  T+   N+   Y  C
Sbjct: 880  NSFYIFLSVLNMPENMIHFFDKHYSSIQTILENRGISSTFLNYSKNTFSGKNEDFMYKQC 939

Query: 496  KDNMNKTI 473
              N+ K I
Sbjct: 940  LMNLEKCI 947


>UniRef50_Q2NH51 Cluster: Conserved hypothetical membrane-spanning
           protein; n=1; Methanosphaera stadtmanae DSM 3091|Rep:
           Conserved hypothetical membrane-spanning protein -
           Methanosphaera stadtmanae (strain DSM 3091)
          Length = 363

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +1

Query: 346 SFVLYKRLVNSNVIVIKNS-YKFILITVYLLSLVHVSANLLRDKLSCSCYLCRISNTYY 519
           S V     +  NV+VI N+ ++  +I+  L S+V V  N L + +  SC LC+  NTY+
Sbjct: 220 SVVYLSEFIIFNVLVIVNNIFRLNIISSCLTSIVDV--NDLCEGMILSCCLCKCRNTYF 276


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 556,472,746
Number of Sequences: 1657284
Number of extensions: 9865673
Number of successful extensions: 21602
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21598
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)