Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H17
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   4.2  
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    25   7.4  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    25   7.4  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   9.8  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 363  KTGKFKCHCHKKQLQVHINYSLST 434
            K+GK  C+ +K  L+ +++Y LST
Sbjct: 1695 KSGKLVCNLYKTILKHYVHYGLST 1718


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 271 NFYTFFEVLTTPSEASPPTSETLHTL 194
           N+++ F    TP+ ASPP S   HTL
Sbjct: 491 NWFSSFSY-QTPNSASPPFSSLSHTL 515


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 62  KFKYNITHQLCTKLAESSA 6
           ++KYN T  LCTK   +SA
Sbjct: 59  EYKYNNTSSLCTKYIHTSA 77


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 334 THRRSFVLYKRLVNSNVIVIKNSYKF 411
           T  R FV Y  L   ++ V+KNSY +
Sbjct: 281 TDFRQFVQYGNLTGLDMAVVKNSYLY 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,951
Number of Sequences: 5004
Number of extensions: 46944
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)