Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H17
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-6|AAG00007.2|  575|Caenorhabditis elegans Intermediate fi...    30   1.3  
AL023816-1|CAA19430.2|  250|Caenorhabditis elegans Hypothetical ...    28   6.8  

>U41538-6|AAG00007.2|  575|Caenorhabditis elegans Intermediate
           filament, d protein1, isoform a protein.
          Length = 575

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = -2

Query: 538 STTYRYGNKYYLSCKDNMNKTIYHE 464
           ++++ YG+ Y L+ +D  NKT++H+
Sbjct: 424 TSSHHYGSSYSLNVRDTHNKTVHHD 448


>AL023816-1|CAA19430.2|  250|Caenorhabditis elegans Hypothetical
           protein T05G11.2 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 352 VLYKRLVNSNVIVIKNSYKFI-LITVYLLSLVHVSANLLRDKLSCSCYLCRISNTYYH 522
           + YK    ++ I+I  S     LI  Y+L       N++   L CS + C I++ YY+
Sbjct: 115 LFYKYRCKTSTIMIYTSILICGLINQYVL--FGYCGNVIDTPLQCSSFFCAINSCYYY 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,645,149
Number of Sequences: 27780
Number of extensions: 261056
Number of successful extensions: 591
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)