Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_H17
         (665 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-rel...    28   6.4  
At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR...    28   6.4  

>At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-related
            contains Pfam PF00400: WD domain, G-beta repeat; similar
            to Lipopolysaccharide-responsive and beige-like anchor
            protein (CDC4-like protein) (Beige-like protein)
            (SP:P50851) [Homo sapiens}
          Length = 1280

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +1

Query: 334  THRRSFVLYKRLVNSNVIVIKNSYKFILITVYLLSLVHVSAN 459
            TH  S VLY  +V+SN++++ N    + + ++L + +H   N
Sbjct: 929  THSPSAVLYVGVVDSNIVLV-NQGLTLSVKIWLTTQLHSGGN 969


>At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR
          class), putative domain signature TIR-NBS-LRR exists,
          suggestive of a disease resistance protein.
          Length = 776

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 16 SASFVHNWCVILYLNFRCKDLRV 84
          S+S  HNW   ++L+FR +D+RV
Sbjct: 3  SSSSSHNWLYDVFLSFRGEDVRV 25


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,096,585
Number of Sequences: 28952
Number of extensions: 217692
Number of successful extensions: 398
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)